Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 630 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 466 / 7e-143 transmembrane receptors;ATP binding (.1.2) AT5G17680 448 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 420 / 1e-128 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 412 / 3e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 403 / 6e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 405 / 1e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 397 / 3e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 398 / 4e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 395 / 4e-120 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T001500 [exp] 1707 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 1707 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 1667 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 1646 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 1598 / 0 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 1593 / 0 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 1588 / 0 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 1569 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 1559 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 595 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 570 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 559 / 4e-178 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 544 / 4e-174 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 517 / 1e-163 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 496 / 7e-157 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 485 / 5e-151 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 467 / 5e-144 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 455 / 2e-140 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10035674 [exp] 452 / 2e-137 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.T002066.2 pacid=42782473 polypeptide=Potri.T002066.2.p locus=Potri.T002066 ID=Potri.T002066.2.v4.1 annot-version=v4.1 ATGACAGAGCCGGAGTCTTCTCGATCTATATCACTAGGGGCCTATGATGTCTTCTTGAGTTTTAGAGGAGAAGACACTCGCAAGACATTTACAGATCATC TCTATACTGCCTTGGTCCAAGCAGGAATCCACACTTTTCGAGATGATGATGAACTTCCGAGGGGAGAAGAAATCTCCGATCATCTCCTCAGGGCAGTTCA AGAATCGAAGATATCCATAGTTGTCTTCTCAAAAGGATATGCTTCTTCTAGATGGTGTCTCAATGAACTTGTAGAGATTCTGAAGTGCAAAAATAGGAAA ACCGGTCAGATTGTTCTTCCTATATTCTATGACATTGATCCTTCAGATGTGAGAAAACAGAATGGCAGTTTTGCAGAAGCATTTGTTAAACATGAAGAGC GTTCTGAAGAGAAGTTGGTGAAGGAGTGGAGAAAAGCTCTTGAGGAGGCTGGAAATCTATCTGGACGGAATCTCAATGATATGGCAAATGGGCATGAAGC AAAATTTATCAAAGAGATTATCAAGGATGTGTTGAATAAATTAGATCCCAAGTACTTGTATGTTCCTGAGCACCTAGTAGGTATGGATCGGCTTGCTCAC AATATTTTTGACTTTCTAAGTACTGCAACCGATGATGTACGCATTGTGGGCATACATGGGATGCCAGGAATCGGAAAGACAACTATAGCAAAAGTTGTAT TTAATCAACTCTGCTATGGATTCGAGGGAAGCTGTTTTCTTTCGAATATCAATGAAACACCAAAAAAACTTACAGGTCTTGTTCGTTTACAAACGCAACT TCTTCGTGATATTTTAAAACAAGATGTTGCAAACTTCGAATGTGTTGATAGAGGAAAGGTTCTGATCAACGAACGAATTCGTCGCAAAAGAGTTCTTTTT GTTGCTGATGATGTGGCTCGTCAGGACCAGCTAAATGCTTTGATGGGAGAGCGAAGTTGGTTCGGTCCGGGAAGTAGAGTAATTATTACAACAAGAGATT CAAATCTTCTTCGTAAAGCGGATCAAACATATCAAATTGAAGAATTGACACGAGATCAGTCCCTTCAGCTTTTCAGCTGGCATGCCTTTAAGCACTCCAA GCCAGCAGAAGATTATATTGAGCTTTCGAAGGATGTAGTTGATTACTGTGGAGGACTTCCTTTGGCTCTTGAGGTTATGGGTGCTTGTCTGTACGGGAAA AACAGAGGTGGTTGGAAATCTGTAATTGACAAATTGAGAAGAATTCCAAACCACGATATTCAAGGAAAGCTTAGAATAAGTTATGACTCACTGGACGGTG AAGAACTACGAAATGCATTCCTTGATATCGCTTGCTTCTTTATTGATAGAAAGAAAAGGTACGTCGCAAAAGTGCTAGGAGCCCGTTGCGGTTACAATCC AGAAGTTGATTTGGAAACTCTCCGTGGAAGGTCTCTGATTAAAGTTAATGCCATTGGAAAGATAACCATGCATGATCTATTACGAGACATGGGAAGGGAG GTTGTTCGTGAAACGTCTCCAAAAGAACCTGGAAAGAGGACCAGAATTTGGAACCAAGAGGATGCATGGAATGTACTTGAGCAGCAGAAGGGTACGGATG TTGTAGAGGGTCTTGCACTGGATGTAAGAGCATCAGAAGCTAAATCACTGAGCACAAGATCATTTGCAAAAATGAAACGCTTAAATTTACTCCAAATCAA TGGAGCACATCTCACCGGATCCTTCAAACTGCTTTCTAAAGAGTTGATGTGGATTTGTTGGCTTCAATGTCCTTTGAAATATTTTTCATCTGATTTTACC TTGGATAATCTGGCTGTTCTTGATATGCAATACAGTAACCTCAAAGAACTATGGAAGGGACAAAAGATTCTCAACAGGTTAAAAATCCTCAATCTCAATC ATTCTAAGAACCTTATTAAAACACCAAACTTGCACAGTTCAAGTCTAGAGAAACTAAAGTTGAAAGGTTGCTCGAGTTTAGTTGAGGTGCATCAATCAAT TGAAAATTTGACAAGCCTTGTTTTCTTGAATCTGGAGGGATGTTGGAATCTGAAGATTCTTCCTGAAAGCATTGGCAATGTAAAGTCTCTTGAAACTTTG AATATTTCTGGGTGTTCACAACTTGAGAAATTGCCAGAATGCATGGGTGATATGGAATCCTTAACCGAGCTGCTAGCAGATGGGATTGAAAATGAGCAAT TTCTCACTTCAATTGGACAATTAAAGCATGTCAGAAGGTTATCGTTGTGTGGATACAGTTCGGCTCCACCAAGTTCTTCTTTGAATTCAGCAGGTGTTTT GAATTGGAAACAGTGGCTGCCAACATCTTTTGGATGGAGATTAGTGAATCATCTTGAGCTTTCTAATGGTGGTTTGTCTGATCGCACAACTAACTGTGTT GATTTCAGTGGTTTGTCCGCTCTAGAAGTATTGGATCTAACAAGAAACAAATTCTCTAGCCTGCCTTCTGGGATCGGCTTCCTTCCCAAGCTAAGGCGGT TGTTTGTTCTGGCATGCGAATATCTTGTATCAATCCTAGATCTTCCCTCAAGTTTAGATTGTTTGGTTGCATCTCATTGCAAATCATTGAAAAGAGTAAG AATACCAATCGAGCAAAAAAAAGATCTATATATAGAACTACATGAAAGTCATTCGTTAGAAGAGATTCAGGGCATCGAAGGTCGAAGTAATAGTTTCTGG TATATTTGTTCTAATCAGTTCAGTCATTCACCAAAGAAATTACAGAAAAGCGTTGTTGAGGTAATGTGCAACGGTCGTCACCCGTATCGTATTTCCCCCA TTCGTGGTGAGATGCCAAATTGGATGAGCTGCAGTGGAGAAGGATGTTCATTGTCATTCCATATACCTTCAGTCTTCCAAGGCTTAGTTGTTTGGTTTAT CTGTCCACTTGAACCCGTGACAATTGAATTCGATTCTCGCATTATTATTATTATAAGAAATAAAAGCAATGGTATTCAATTGTTTGAAGATAAACGAACA CCAGGAACTGACATGTTTTTTATTGAGGGATTCATAAGATACATAAGTATAAGTGAAATGGGAATGGAAGATTACTGTGGAGATGACGAATTGGAACTCT GCATTTATTCAGAGCCAACAGAGCATGCGGTGCGCCGTCTTCCATTCTACCCCGTACACATTAAAGAATGTGGGGCCCATGTGATCGCAAAGAAGTTAAA TTCATTTGAAGAGTCGGCAATGGGAAGAGCTACAGTGATGCCTTCACCATCGCTGTATCATCTGCTTCCTCATCCCCATTGTGGTTCAATTACAGCATCT ACACCTAAGCAATGGAGTAATTATTTATTTGCGAAGCTGCAAGAATATAACCTCAGTTTAACATTTCATGGCAATGTGCAACGGTCGTCACCCGTAACGT ATTGCTTCATTTCGTGGTGA
AA sequence Show only first row Show all	>Potri.T002066.2 pacid=42782473 polypeptide=Potri.T002066.2.p locus=Potri.T002066 ID=Potri.T002066.2.v4.1 annot-version=v4.1 MTEPESSRSISLGAYDVFLSFRGEDTRKTFTDHLYTALVQAGIHTFRDDDELPRGEEISDHLLRAVQESKISIVVFSKGYASSRWCLNELVEILKCKNRK TGQIVLPIFYDIDPSDVRKQNGSFAEAFVKHEERSEEKLVKEWRKALEEAGNLSGRNLNDMANGHEAKFIKEIIKDVLNKLDPKYLYVPEHLVGMDRLAH NIFDFLSTATDDVRIVGIHGMPGIGKTTIAKVVFNQLCYGFEGSCFLSNINETPKKLTGLVRLQTQLLRDILKQDVANFECVDRGKVLINERIRRKRVLF VADDVARQDQLNALMGERSWFGPGSRVIITTRDSNLLRKADQTYQIEELTRDQSLQLFSWHAFKHSKPAEDYIELSKDVVDYCGGLPLALEVMGACLYGK NRGGWKSVIDKLRRIPNHDIQGKLRISYDSLDGEELRNAFLDIACFFIDRKKRYVAKVLGARCGYNPEVDLETLRGRSLIKVNAIGKITMHDLLRDMGRE VVRETSPKEPGKRTRIWNQEDAWNVLEQQKGTDVVEGLALDVRASEAKSLSTRSFAKMKRLNLLQINGAHLTGSFKLLSKELMWICWLQCPLKYFSSDFT LDNLAVLDMQYSNLKELWKGQKILNRLKILNLNHSKNLIKTPNLHSSSLEKLKLKGCSSLVEVHQSIENLTSLVFLNLEGCWNLKILPESIGNVKSLETL NISGCSQLEKLPECMGDMESLTELLADGIENEQFLTSIGQLKHVRRLSLCGYSSAPPSSSLNSAGVLNWKQWLPTSFGWRLVNHLELSNGGLSDRTTNCV DFSGLSALEVLDLTRNKFSSLPSGIGFLPKLRRLFVLACEYLVSILDLPSSLDCLVASHCKSLKRVRIPIEQKKDLYIELHESHSLEEIQGIEGRSNSFW YICSNQFSHSPKKLQKSVVEVMCNGRHPYRISPIRGEMPNWMSCSGEGCSLSFHIPSVFQGLVVWFICPLEPVTIEFDSRIIIIIRNKSNGIQLFEDKRT PGTDMFFIEGFIRYISISEMGMEDYCGDDELELCIYSEPTEHAVRRLPFYPVHIKECGAHVIAKKLNSFEESAMGRATVMPSPSLYHLLPHPHCGSITAS TPKQWSNYLFAKLQEYNLSLTFHGNVQRSSPVTYCFISW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T002066 [exp]	0	1

Compare expression of checked genes

Potri.T002066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.