Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G63640	450 / 8e-157	ENTH/VHS/GAT family protein (.1)
AT1G76970	191 / 3e-56	Target of Myb protein 1 (.1)
AT3G08790	191 / 7e-55	ENTH/VHS/GAT family protein (.1)
AT1G21380	187 / 3e-54	Target of Myb protein 1 (.1)
AT4G32760	185 / 3e-52	ENTH/VHS/GAT family protein (.1.2)
AT5G01760	140 / 1e-36	ENTH/VHS/GAT family protein (.1)
AT2G38410	141 / 2e-36	ENTH/VHS/GAT family protein (.1)
AT5G16880	77 / 4e-15	Target of Myb protein 1 (.1.2.3)
AT1G06210	44 / 8e-05	ENTH/VHS/GAT family protein (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T005401 [exp]	687 / 0	AT5G63640	449 / 1e-156	ENTH/VHS/GAT family protein (.1)
Potri.004G138600 [exp]	590 / 0	AT5G63640	447 / 1e-155	ENTH/VHS/GAT family protein (.1)
Potri.018G039100 [exp]	200 / 1e-57	AT4G32760	561 / 0.0	ENTH/VHS/GAT family protein (.1.2)
Potri.006G241000 [exp]	192 / 9e-55	AT4G32760	630 / 0.0	ENTH/VHS/GAT family protein (.1.2)
Potri.005G184900 [exp]	182 / 3e-52	AT1G21380	473 / 2e-163	Target of Myb protein 1 (.1)
Potri.002G075500 [exp]	180 / 3e-51	AT1G21380	471 / 2e-162	Target of Myb protein 1 (.1)
Potri.006G106500 [exp]	172 / 9e-48	AT2G38410	407 / 2e-133	ENTH/VHS/GAT family protein (.1)
Potri.016G131900 [exp]	168 / 5e-46	AT2G38410	406 / 2e-132	ENTH/VHS/GAT family protein (.1)
Potri.013G082500 [exp]	82 / 5e-17	AT5G16880	553 / 0.0	Target of Myb protein 1 (.1.2.3)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10022667 [exp]	475 / 1e-166	AT5G63640	450 / 1e-156	ENTH/VHS/GAT family protein (.1)
Lus10012506 [exp]	462 / 6e-162	AT5G63640	445 / 1e-154	ENTH/VHS/GAT family protein (.1)
Lus10022140 [exp]	197 / 2e-56	AT4G32760	637 / 0.0	ENTH/VHS/GAT family protein (.1.2)
Lus10018948 [exp]	176 / 1e-50	AT1G21380	439 / 1e-151	Target of Myb protein 1 (.1)
Lus10028649 [exp]	181 / 2e-50	AT1G21380	452 / 7e-152	Target of Myb protein 1 (.1)
Lus10025264 [exp]	173 / 1e-47	AT2G38410	406 / 1e-132	ENTH/VHS/GAT family protein (.1)
Lus10029739 [exp]	168 / 8e-47	AT1G21380	518 / 0.0	Target of Myb protein 1 (.1)
Lus10042770 [exp]	167 / 2e-46	AT1G21380	514 / 4e-180	Target of Myb protein 1 (.1)
Lus10022753 [exp]	165 / 7e-45	AT5G01760	434 / 3e-144	ENTH/VHS/GAT family protein (.1)
Lus10014155 [exp]	161 / 1e-43	AT5G01760	439 / 5e-146	ENTH/VHS/GAT family protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [poplar] [flax]	ENTH_VHS	PF00790 [poplar] [flax]	VHS	VHS domain
CL0009 [poplar] [flax]		PF03127 [poplar] [flax]	GAT	GAT domain

Representative CDS sequence

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>Potri.T010700.6 pacid=42784477 polypeptide=Potri.T010700.6.p locus=Potri.T010700 ID=Potri.T010700.6.v4.1 annot-version=v4.1

ATGGCAGCTGAGCTTGTCAGTTCTGCAACCAGTGATAAACTGACTGAAGTAGATTGGACCAAAAATATTGAAATCTGTGAATTAGTTGCACGTGATGAAA

GGCAAGCTAGAGATGTTGTTAAAGCTATTAAAAAACGTTTGGGGAGTAAGAATGCCAATACTCAATTATATGCAGTGATGTTGTTGGAGATGCTGATGAA

TAATATTGGGGAACAAGTTCATAGACAGGTGATTGATACAGGGATTCTACCCATTCTTGTCAAGATAGTGAAGAAAAAGACAGAGTTGCCTGTAAGAGAA

AGGATATTTCTTCTTCTAGATGCCACACAGACGGCTCTTGGTGGTGCTTCTGGAAAGTTCCCTCAGTACTATTCTGCATATTATGATTTGGTGTGTGCTG

GAGTGCAATTTCCTCAAAGACCTCGTGAAAGACCATCAAATCATCAGGCCACCCAAGAAAGTAAGAAAAATACATTAAATGGGGAACTTGCTGCCGCTAG

ACATGAGGTGGGTGCTCATCCAGTACCAGTGGAACCTCAAGTTGTTCCTGAATCCAGTATTATTCAGAAGGCGAGCAATGCTCTGGAGGTTTTAAAAGAA

GTCCTTGATGCTGTTGATTCTCAAAATCCTGAGGGAGCGAAGGATGAGTTTACTCTTGATCTTGTGGAACAGTGTTCATTCCAAAAGCAGAGAGTAATGC

ATCTTGTGATGACTTCTAGGGATGAAAAGTTGGTCTCTCAAGCTATTGAATTGAATGAGCAGCTACAAAAAGTTCTGGCAAGACATGATTCCCTTCTATC

TGGGAGGTCTACAGTTTCAGATACGACTACCATTTCTGATAGAACTACTACAACAGCAAATCATTTTAATCATGAGGAATCAGAGGAAGAGGAGGAGCCT

GAACAGCTTTTCCGAAGGTTAAGAAAGGGGAAGGCTTGTGCAAGACCTGAAGATGAAGGCAACTCAGAAGAGCGTCTTCCTTTGGGCTTGCTTGGATCGA

CAATTCCAGGAGATAGGCTGAACCGTCCACTTATACGGCCACTTCCATCCGAGCAGCCACAGGATCCCAACGCAAATTGTGCACCTGTTGTAATTCCACC

ACCACCTGCGAAACACATGGAAAGGCAGAAATTCTTTCAGGAAAAGAAGGCTGATGGTTCTGCTGTGTCTGGCCACATGAGGGGTCTTTCGTTACACAGT

CGCAATGCCAGCAGTTCCTGCAGTGGAAGCATAGATTTTAGTGACTAG

AA sequence

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>Potri.T010700.6 pacid=42784477 polypeptide=Potri.T010700.6.p locus=Potri.T010700 ID=Potri.T010700.6.v4.1 annot-version=v4.1

MAAELVSSATSDKLTEVDWTKNIEICELVARDERQARDVVKAIKKRLGSKNANTQLYAVMLLEMLMNNIGEQVHRQVIDTGILPILVKIVKKKTELPVRE

RIFLLLDATQTALGGASGKFPQYYSAYYDLVCAGVQFPQRPRERPSNHQATQESKKNTLNGELAAARHEVGAHPVPVEPQVVPESSIIQKASNALEVLKE

VLDAVDSQNPEGAKDEFTLDLVEQCSFQKQRVMHLVMTSRDEKLVSQAIELNEQLQKVLARHDSLLSGRSTVSDTTTISDRTTTTANHFNHEESEEEEEP

EQLFRRLRKGKACARPEDEGNSEERLPLGLLGSTIPGDRLNRPLIRPLPSEQPQDPNANCAPVVIPPPPAKHMERQKFFQEKKADGSAVSGHMRGLSLHS

RNASSSCSGSIDFSD

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T010700 [exp]	0	1

Potri.T010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T010700 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T010700 coexpression network