Gene [POPLAR] | FIBexDB

External link

JGI Phytozome v13

[genome browser]

Popgenie

AspWood

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G16520	339 / 3e-112	UGT88A1	UDP-glucosyl transferase 88A1 (.1.2.3)
AT4G01070	236 / 2e-72	UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
AT3G50740	222 / 7e-67	UGT72E1	UDP-glucosyl transferase 72E1 (.1)
AT4G15280	221 / 2e-66	UGT71B5	UDP-glucosyl transferase 71B5 (.1)
AT1G01420	220 / 3e-66	UGT72B3	UDP-glucosyl transferase 72B3 (.1)
AT2G18560	216 / 2e-65		UDP-Glycosyltransferase superfamily protein (.1)
AT3G21760	214 / 6e-64	HYR1	HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
AT2G18570	214 / 7e-64		UDP-Glycosyltransferase superfamily protein (.1)
AT1G01390	213 / 3e-63		UDP-Glycosyltransferase superfamily protein (.1)
AT3G21800	210 / 2e-62	UGT71B8	UDP-glucosyl transferase 71B8 (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T010800 [exp]	826 / 0	AT3G16520	343 / 6e-114	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.017G150000 [exp]	397 / 1e-134	AT3G16520	503 / 1e-176	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.017G150100 [exp]	390 / 7e-132	AT3G16520	451 / 9e-156	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.004G070000 [exp]	389 / 1e-131	AT3G16520	474 / 4e-165	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.004G069600 [exp]	387 / 5e-131	AT3G16520	498 / 2e-174	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.004G069800 [exp]	387 / 1e-130	AT3G16520	496 / 7e-174	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.004G071000 [exp]	384 / 1e-129	AT3G16520	485 / 2e-169	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.004G070900 [exp]	381 / 1e-128	AT3G16520	478 / 2e-166	UDP-glucosyl transferase 88A1 (.1.2.3)
Potri.015G027800 [exp]	337 / 3e-111	AT3G16520	355 / 1e-118	UDP-glucosyl transferase 88A1 (.1.2.3)

Flax homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039301 [exp]	375 / 6e-126	AT3G16520	481 / 9e-168	UDP-glucosyl transferase 88A1 (.1.2.3)
Lus10027542 [exp]	350 / 2e-116	AT3G16520	431 / 3e-148	UDP-glucosyl transferase 88A1 (.1.2.3)
Lus10039302 [exp]	338 / 1e-111	AT3G16520	393 / 2e-133	UDP-glucosyl transferase 88A1 (.1.2.3)
Lus10005950 [exp]	249 / 3e-77	AT4G01070	573 / 0.0	UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10029452 [exp]	239 / 4e-73	AT4G01070	582 / 0.0	UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10024037 [exp]	234 / 5e-71	AT2G18570	412 / 3e-140	UDP-Glycosyltransferase superfamily protein (.1)
Lus10041713 [exp]	228 / 6e-69	AT2G18570	415 / 3e-141	UDP-Glycosyltransferase superfamily protein (.1)
Lus10029453 [exp]	227 / 9e-69	AT4G01070	515 / 0.0	UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Lus10041715 [exp]	224 / 1e-67	AT3G50740	478 / 6e-166	UDP-glucosyl transferase 72E1 (.1)
Lus10005951 [exp]	222 / 5e-67	AT4G01070	510 / 5e-179	UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0113 [poplar] [flax]	GT-B	PF00201 [poplar] [flax]	UDPGT	UDP-glucoronosyl and UDP-glucosyl transferase

Representative CDS sequence

Show only first row Show all

>Potri.T010801.1 pacid=42784398 polypeptide=Potri.T010801.1.p locus=Potri.T010801 ID=Potri.T010801.1.v4.1 annot-version=v4.1

ATGAAAGAAGCAATTGTCTTGTATCCAGCGGCAACCTCCCACCAGATGATCTCTATGGTGGAGTTAGCTAAGCTGATCCTGCAACACCATCCCAACATCT

CCATTACAATTTTAGTAGCAATCATGCCTTTTGACACCTCCACCATTTCCACATATATCAGTTCCATCTCCCAAACAAGTCTTCCCATATCCTTCCTCTC

CCTCCCTCAACCCAGCGAAGACCCTCCTGGACCAGCGGCTGCAGCCACTTTGGGTAAAGCCGCATTCGATTATATCCGCCTATACACCCCTAAAGTACTC

GATGCCCTCAAAACCATCTCTCTCACCTCCACTGTTCTCGCTTTCATAATTTCCACCTTCGGCATCACTTACGACACGCCCATCCCAACTTACTTATACT

TCACTTCTGGTGCTTCTAGTTTTGCCAGCATCCTCTACTTGCCCACCATCCATAACCAAACTACCAAGAGCTTCAAAGACCTTCCCAACAATACCCCTTT

GCACTTTCCTGGACTGCCACCCATCAAACCCTCTCACCTGCCTGAACCCCTACTAGATCGCGGCCATCCTGCCTACCAGGAATTCTTTAGCCTTGGTACT

TTACTACCTAATTTGAAGGGGATGATACTGAACACTTTTGAAATGCTTGAGCCACAAGCGATCAAAGCTATCACCGAGGGTGCTTGTGTTCCAAAGGGCT

CAACCCCTCCTTTATACTGCATAGGGCCAAGGATTGTTGATGCCAAACAAAGGGGTGCCTCAGATGATGCTTTATCAAAATGTTTGCTGTGGTTAGACAA

GCAGCCAAGCCAGAGTGTGGTGTTCTTATGTTTTGGCAGAAAGGGAGCTTTCTCTGCACCTCAGCTGAAGGAGATTGCTTTTGGCCTGGAAAGGAGCAAA

CAAAGATTTATGTGGGTGGTGAGGAATCCACCACCAAATTCCGACACGGAACGTGGCCTAGAGGAACTACTGCCAGAAGGGTTCTTGAAAAGAACAAAAG

AAAGGGGTCTAGTGCTGAAATCTTGGGCACCACAAGCTGCAATTCTGAGCCACCAAGCAGTGGGTGGATTTGTGACTCATTGTGGGTGGAACTCAGTGCT

TGAAGCAGTAACTTACGGTGTGCCAATGTTGCCTTGGCCATTGTATGCAGAACAGAGGTTGAATAGTGTGGTTTTGGCAGAGGAAATAAAGCTGACACCA

ATGCCTTTTTTAACAGAAGATGGTAAAGGAGGAGTGGTGAGCTCAGAGGAGGTGGAGAGAAAGGTGAGAGAGTTGATGGGATTGGAAGGGAAAGGATTCA

GAGAAAGTAGTTCGATGATGAAAATTATGGCTATGGCTGCTTGGACTAATGGTGGGTCTTCCTTCACAGCTTTGTCCAAGTTGGTGGCTTCTTGGAAGCA

AGAACAATCATAA

AA sequence

Show only first row Show all

>Potri.T010801.1 pacid=42784398 polypeptide=Potri.T010801.1.p locus=Potri.T010801 ID=Potri.T010801.1.v4.1 annot-version=v4.1

MKEAIVLYPAATSHQMISMVELAKLILQHHPNISITILVAIMPFDTSTISTYISSISQTSLPISFLSLPQPSEDPPGPAAAATLGKAAFDYIRLYTPKVL

DALKTISLTSTVLAFIISTFGITYDTPIPTYLYFTSGASSFASILYLPTIHNQTTKSFKDLPNNTPLHFPGLPPIKPSHLPEPLLDRGHPAYQEFFSLGT

LLPNLKGMILNTFEMLEPQAIKAITEGACVPKGSTPPLYCIGPRIVDAKQRGASDDALSKCLLWLDKQPSQSVVFLCFGRKGAFSAPQLKEIAFGLERSK

QRFMWVVRNPPPNSDTERGLEELLPEGFLKRTKERGLVLKSWAPQAAILSHQAVGGFVTHCGWNSVLEAVTYGVPMLPWPLYAEQRLNSVVLAEEIKLTP

MPFLTEDGKGGVVSSEEVERKVRELMGLEGKGFRESSSMMKIMAMAAWTNGGSSFTALSKLVASWKQEQS

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T010801 [exp]	0	1

Potri.T010801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T010801 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T010801 coexpression network