Plant FIBer expression Database

Potri.T011100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72160 454 / 1e-154 Sec14p-like phosphatidylinositol transfer family protein (.1)
AT4G09160 450 / 5e-151 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
AT1G22530 395 / 2e-129 PATL2 PATELLIN 2 (.1)
AT1G72150 382 / 7e-126 PATL1 PATELLIN 1 (.1)
AT3G51670 330 / 1e-107 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
AT1G30690 328 / 4e-105 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
AT1G01630 72 / 7e-14 Sec14p-like phosphatidylinositol transfer family protein (.1)
AT1G19650 71 / 1e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
AT2G21520 71 / 1e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
AT4G34580 70 / 2e-12 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T011101
[exp]
875 / 0 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.004G138200
[exp]
785 / 0 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.019G079500
[exp]
523 / 3e-180 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.013G106000
[exp]
522 / 1e-179 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.013G105900
[exp]
491 / 4e-168 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.019G079300
[exp]
489 / 4e-167 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
Potri.001G461400
[exp]
379 / 5e-125 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Potri.016G127700
[exp]
332 / 2e-108 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Potri.005G224800
[exp]
274 / 2e-85 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001542
[exp]
487 / 3e-167 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1)
Lus10009453
[exp]
404 / 8e-138 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1)
Lus10001539
[exp]
382 / 2e-129 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1)
Lus10038435
[exp]
345 / 8e-112 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Lus10031752
[exp]
328 / 1e-103 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Lus10001269
[exp]
319 / 5e-103 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Lus10012219
[exp]
314 / 2e-102 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Lus10003552
[exp]
249 / 1e-75 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Lus10025540
[exp]
213 / 9e-65 AT4G09160 210 / 2e-63 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Lus10031175
[exp]
202 / 7e-61 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0512 CRAL_TRIO PF00650 CRAL_TRIO CRAL/TRIO domain
CL0214 UBA PF03765 CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence
>Potri.T011100.1 pacid=42784451 polypeptide=Potri.T011100.1.p locus=Potri.T011100 ID=Potri.T011100.1.v4.1 annot-version=v4.1
ATGGCAGAGGTGGCACAAAACGTGAGTCAAGAACAAGTGGTGGTGGTAACTGATGTTCCACAAGCTGAGAAAACAACACCAGTGCCACCAACAATGCCAG
TGGTGGGGAAAGAGCTACCATTGCCCGTGCCTGAGACTGAGGAGGTGCCAATGAAGCCAAAGCAGGTTGAGGAGGCTGTTGTGGAGACTGAGGATTTGAA
AGCTAGTGGAGGTGATGATGAGAAGATGCCTCAGTTGGTTTCTTTTAAGGAAGAAAGTACTAAAGTTGCTGATCTTCTTGAGTCTGAGAAGAAAGCACTT
CAAGAATTTAAGAAACTTGTTCAGGAAGCACTTAACAAGCATGAATTTAGTGCTTTAACAACAACACCAGCACCAGCTAAAGAAGAGAAGAAGAAAGATG
TGGTGGTGGCCTCGGAGGAGGAGAAAAAACCAGCCCAAGAAGAGGAAACACCGGCAGTAATAGAGGAGAAGGAAAACGTGGAGCCTCAAGTTGTAGCAGA
GAAAGAAGAGAAGAAAGAAGTGGTGGAAAGTGAGGTTCTTGATGATCAAGAAAAGGTGGCTCCCGTTCCTGCTAGTGATACTACTGCAGTTAGTACTGTG
GATGATGATGGTGCCAAGACTGTAGAAGCCATTGAAGAGACCATTGTAGCTGTCTCCTCTTCAGTGGCTTCACAAGAGGGGACTTCAGCTCAGGCTACAA
AAGAGCCTGAGGGAGAGACAAAGGCTGCCTCAGCATTAGATGAGGGAGCCAAAGAAGTTAAGTCTGAGACTGTGGTGGAAGTGACACCAGAGGAAGTATC
AATCTGGGGCATAACGCTTCTTGCTGATGACAGAAGTGATGTGATTCTATTGAAATTTCTCAGAGCCAGGGATTTCAAGGTGAAAGATGCCTTCACCATG
CTCAAGAACACAATTCGCTGGAGAAAGGAGCTCGGCATTGATGAATTGCTTGAACAAGATTTGGGCTGTGATGATTTGGGGAAGGTGGTATTTATGCATG
GTCTTGACAAAGAGGGACACCCAGTTTGCTACAATGTCTACGGGGAGTTCCAAAACAAGGAGCTTTACAAGAATTCATTTTCTGATGAAGAGAAGAGGCA
GAGATTCTTGAGGTGGAGAATTCAATTCCTGGAAAGGAGTATTAGGAAATTGGATTTCAGTCCTGGTGGAGTCTCTACCATTGTTCAGGTTAATGACTTG
AAAAATTCTCCTGGACCAGCTAAGAGAGAGCTTAGACAAGCTACTAGACAGGCACTTCAATTGCTTCAAGACAACTATCCAGAATTTGTGGCCAAACAGA
TCTTCATCAATGTGCCCTGGTGGTACCTCACAGTCAATAGAATGATAAGTCCATTTTTAACTCAGAGAACCAGAAGCAAGTTTGTCTTTGCTGGTCCTTC
CAAATCTGCAGAAACCCTCACCAGGTACATAACTGCTGAGCAAATACCAGTGAAGTATGGAGGACTAAGCAAAGATGGTGAATTTTGCACAGCTGATGCT
GTTACTGAGATTACAGTGAAGGCATCAGCAAAGCACACTGTAGAATTCCCAGTTACTGAGACATGCCTTCTGACTTGGGAAATGAGAGTTGTGGGATGGG
ATGTGAGCTATGGCGCCGAATTCGTACCAAGTGCTGATGATAGCTACACAGTGATCATCCAAAAGGCTAGAAAGGTTGCTACAACTGAAGAACCAGTGGT
TAGCAACAGTTTTAAAGTTGGTGAACCTGGTAAAGTTGTTCTCACCATTGACAATACCACTTCCAAGAAGAAGAAGAAGCTCCTCTATCGCTTGAAAACC
AAACCTTGCTCTGATTAA
AA sequence
>Potri.T011100.1 pacid=42784451 polypeptide=Potri.T011100.1.p locus=Potri.T011100 ID=Potri.T011100.1.v4.1 annot-version=v4.1
MAEVAQNVSQEQVVVVTDVPQAEKTTPVPPTMPVVGKELPLPVPETEEVPMKPKQVEEAVVETEDLKASGGDDEKMPQLVSFKEESTKVADLLESEKKAL
QEFKKLVQEALNKHEFSALTTTPAPAKEEKKKDVVVASEEEKKPAQEEETPAVIEEKENVEPQVVAEKEEKKEVVESEVLDDQEKVAPVPASDTTAVSTV
DDDGAKTVEAIEETIVAVSSSVASQEGTSAQATKEPEGETKAASALDEGAKEVKSETVVEVTPEEVSIWGITLLADDRSDVILLKFLRARDFKVKDAFTM
LKNTIRWRKELGIDELLEQDLGCDDLGKVVFMHGLDKEGHPVCYNVYGEFQNKELYKNSFSDEEKRQRFLRWRIQFLERSIRKLDFSPGGVSTIVQVNDL
KNSPGPAKRELRQATRQALQLLQDNYPEFVAKQIFINVPWWYLTVNRMISPFLTQRTRSKFVFAGPSKSAETLTRYITAEQIPVKYGGLSKDGEFCTADA
VTEITVKASAKHTVEFPVTETCLLTWEMRVVGWDVSYGAEFVPSADDSYTVIIQKARKVATTEEPVVSNSFKVGEPGKVVLTIDNTTSKKKKKLLYRLKT
KPCSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T011100
[exp]
0 1

Potri.T011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.