Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23630 1884 / 0 PDR2, MIA PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) AT2G22950 99 / 1e-20 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G37640 96 / 9e-20 ACA2 calcium ATPase 2 (.1) AT1G27770 95 / 2e-19 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT1G10130 88 / 2e-17 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) AT2G07560 84 / 5e-16 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G17260 81 / 3e-15 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT2G41560 80 / 8e-15 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G63380 79 / 1e-14 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT4G00900 77 / 5e-14 ATECA2, ECA2 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G137100 [exp] 2258 / 0 AT5G23630 1917 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Potri.007G055500 [exp] 95 / 2e-19 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 95 / 2e-19 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.013G040201 [exp] 90 / 7e-18 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G117400 [exp] 85 / 2e-16 AT1G10130 1648 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Potri.016G043100 [exp] 84 / 6e-16 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.005G052700 [exp] 83 / 8e-16 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.014G101900 [exp] 81 / 4e-15 AT4G00900 1698 / 0.0 ER-type Ca2+-ATPase 2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ER-type Ca2+-ATPase 2 (.1) Potri.006G165900 [exp] 79 / 2e-14 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020724 [exp] 2044 / 0 AT5G23630 1928 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10029800 [exp] 2040 / 0 AT5G23630 1940 / 0.0 PI DEFICIENCY RESPONSE 2, MALE GAMETOGENESIS IMPAIRED ANTHERS, phosphate deficiency response 2 (.1) Lus10018668 [exp] 94 / 4e-19 AT1G10130 1524 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10007734 [exp] 94 / 6e-19 AT1G10130 1639 / 0.0 ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 3, endoplasmic reticulum-type calcium-transporting ATPase 3 (.1) Lus10018687 [exp] 92 / 1e-18 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10042040 [exp] 87 / 6e-17 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10019300 [exp] 85 / 3e-16 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10011522 [exp] 82 / 2e-15 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10035439 [exp] 82 / 3e-15 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10040166 [exp] 78 / 4e-14 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.T012200.1 pacid=42784439 polypeptide=Potri.T012200.1.p locus=Potri.T012200 ID=Potri.T012200.1.v4.1 annot-version=v4.1 ATGGTGTTGACGTTTAATGTAGGAGGGAAAGTAGTGGAGAGAGTAGATTTGATAAGGAAGAAGAAATGGCCATGGAGATTCGATATTTTGCCATTTGCAA TTCTGTATGCGGTTTGGATGGTCACGATTGTGCCGAGCATTGACATTGTTGATGCTTTAATTGTTCTTGGTGGACTCGTTTCGATTCATGTTCTGGCTTT GCTTTTCACTGCCTGGTCTGTTGATTTCAAGTGCTTTGTTCAGTATAGTAAGGTTAATGATATTTATGCTGCGGATTCATGTAAAGTTACGCCGGCGAAG TTTTCTGGTTCTAAAGAAGTTGTGCCCTTGCATATTCGTCAACAATCAGCAGCATCCTCAACGTCAGGGGATGTGGAAGAATTCTACTTTGATTTCAGAA AGCAGTGTTTCATCTATTCAAAGGAGAATGGGACGTTTCGCAAGCTTCCTTACCCTACCAAGGAAACATTTGGCTACTATCTTAAAAGCACTGGCCATGG CTCTGAGGCTAAGGTAGCTGCTGCTGCTGAGAAATGGGGACGGAATGTATTTGAATATCCGCAACCCACATTCCAAAAATTATTGAAAGAGCAGTGCATG GAGCCTTTTTTTGTATTTCAGGTATTCTGTGTGGGGCTTTGGTGCTTGGATGAATTTTGGTACTACAGCTTGTTCACCCTCTTTATGCTGTTCATGTTTG AGTCAACAATGGCAAAGAGTCGGTTGAAGACTCTAAGCGAGCTAAGACGTGTTAGAGTGGACACCCAGACTGTAATGGTGCATCGATGTGGGAAGTGGGT GAAACTCTCTGGAACTGATCTTTTACCTGGGGATGTTGTCTCCATTGGACGCTCCTCTGGTCAGAATGGGGAAGACAAGTCTGTACCAGCTGACCTGCTT CTATTGGCTGGAAGTGCCATTGTGAATGAAGCCATTCTCACAGGCGAGTCTACTCCCCAATGGAAGGTTTCAATCATGGGTAGGGGAACTGAGGAGAAGT TATCAGCCAAACGTGATAAGAACCACGTTTTATTTGGCGGGACTAAAATATTGCAGCATACTCCAGATAAGACCTTTCCCCTAAGGGCTCCCGATGGCGG CTGTCTAGCTGTTGTTCTACGAACTGGGTTTGAAACGAGTCAAGGGAAACTGATGAGGACCATTTTGTTTTCCACAGAAAGGGTTACTGCCAACAGTTGG GAAAGTGGTTTGTTCATACTATTTCTACTTGTGTTTGCAATCATTGCTGCTGGTTATGTACTTAAAAAGGGATTAGAGGATCCCACAAGGAGCAAGTACA AGCTTTTCCTAAGTTGTTCACTTATCATAACATCTGTGATTCCACCTGAGCTGCCGATGGAATTATCAATAGCAGTTAATACATCTCTTATTGCATTGGC TCGGCGTGGAATATTTTGTACCGAACCCTTTCGCATTCCTTTTGCAGGAAAGGTTGATATATGTTGTTTTGATAAAACTGGAACACTCACATCAGATGAC ATGGAGTTCTGTGGTGTTGTTGGGCAGACAGAGAGTACAGATTTAGAAACTGATATGACCAAAGTGCCTGCCTGTACAGCTGAGATTTTGGCCTCTTGTC ACGCATTGGTGTTTGTGGACAACAAGCTGGTTGGTGATCCACTTGAGAAGGCTGCGCTGAAGGGAATAGACTGGAGTTATAAATCTGATGAAAAGGCCAT GCCCAAGAAAGGAGGTGGTAATGCTGTTCAGATTGTCCAGAGACACCACTTTGCATCCCATTTGAAACGAATGGCAGTTGTTGTTCGCATACAAGAGGAA TTCTTGGCATTCGTGAAGGGTGCTCCTGAAACAATCCAGGATAGACTTGTTGATCTGCCATCATCATATGTTGATACATATAAAAAATACACACGTCAAG GGTCTCGGGTTCTGGCCCTTGCTTTCAAGAACCTTCCGGACATGACAGTTGGTGAAGCTAGAAGCTTGGATAGAGATGTAGTGGAGACTGGTCTTACATT TGCTGGCTTTGCTGTATTTAACTGCCCTATAAGAGCGGATTCAGCTGCTGTTTTGTCTGAATTAAAGAATTCGTCTCATGACTTGGTGATGATCACTGGT GACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTGCATATCATATCAAAACCAGCATTAATTCTTTGTCCATCGAGTGGACAGGGATATGAGTGGA TATCGCCTGATGAAATGGAGAAAATTAGTTATGGTGACAAAGAGGCTGAAGAATTGTCAGAGACCCATGATCTCTGTATTGGAGGTGACTGCATTGAAAT GTTGCAACAGAGTTCTGCTGTTCTACGAGTCATCCCTTATGTCAAGGTTTTTGCAAGAGTTGCTCCAGAGCAAAAGGAACTTATCTTGACCACTTTTAAA ACAGTTGGGAGGATCACTCTGATGTGCGGGGATGGAACCAATGATGTTGGTGCTCTAAAGCAGGCCCACGTAGGAGTTGCATTGTTGAATGCAGTGCCTC CAACACAAAGTGGAAACAAGTCATCAGAAACACCTAAAGATGGAACTCCCAAGCTTTCAAAGTCAAAAAAACCGAAGCCTGAAGTTAGTAATTTAAATGG AGAAAGCTCTTCTAGAGGTAAAGCTGTATCAAGATCAGATTCTGCTAGCCAATCAGCTGGTAACCGTCATCTGACACCAGCAGAAATGCAACGACAGAGG TTGAAGAAGCTAATGGAAGAGATGAACGAGGAGGGTGATGGTCGCTCAGCCCCCATTGTCAAGCTCGGAGATGCCTCAATGGCTTCCCCCTTCACAGCAA AGCATGCATCGGTTGCCCCCACGACAGACATAATTCGTCAGGGTCGAAGTACTTTAGTGACTACCCTCCAGATGTTTAAAATACTTGGTCTTAACTGCCT TGCTACAGCATATGTGTTGAGCGTCATGTATCTGGATGGCGTCAAGCTTGGTGATGTGCAGGCCACAATCAGTGGCGTCTTCACTGCTGCCTTTTTCCTT TTCATCTCCCAAGCACGGCCCCTTCCCACACTTTCAGCTGAAAGACCCCACCCTAATATTTTCTGCTTCTACGTCTTCCTTTCTCTCATGGGACAGTTTG CTATCCACCTGTTTTTCTTGATGTCGTCTGTGAAAAGTGCTGAGAAATACATGCCTGATGAATGCATCGAGCCTGACTCTAATTTTCATCCGAATCTTGT CAACACCGTTTCATACATGGTGAGCATGATGCTTCAGCTAGCCACTTTTGCTGTGAACTATATCGGTCATCCTTTCAACCAGAGCATCACAGAAAGCAAA CCGTTCCTATACGCCCTCTTGGCTGCTTCAGGTTTCTTCACGGTGATCACCTCTGATCTATTCAGGAACTTGAATGACTGGTTGAAATTGGTGCCCTTGC CACCAGAATTGAGGAACAAGCTTTTGATCTGGGCTGTTCTCATGTTTCTGAGCTGCTATACGTGGGAGAGGCTGCTGAAATGGGCTTTCCCGGGTAGGAT TCCAGCTTGGAAGAAACGTCAACGGTTGGCTGTGGCCAACGTAGAGAAGAAGAAACATGTCTGA
AA sequence Show only first row Show all	>Potri.T012200.1 pacid=42784439 polypeptide=Potri.T012200.1.p locus=Potri.T012200 ID=Potri.T012200.1.v4.1 annot-version=v4.1 MVLTFNVGGKVVERVDLIRKKKWPWRFDILPFAILYAVWMVTIVPSIDIVDALIVLGGLVSIHVLALLFTAWSVDFKCFVQYSKVNDIYAADSCKVTPAK FSGSKEVVPLHIRQQSAASSTSGDVEEFYFDFRKQCFIYSKENGTFRKLPYPTKETFGYYLKSTGHGSEAKVAAAAEKWGRNVFEYPQPTFQKLLKEQCM EPFFVFQVFCVGLWCLDEFWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVRVDTQTVMVHRCGKWVKLSGTDLLPGDVVSIGRSSGQNGEDKSVPADLL LLAGSAIVNEAILTGESTPQWKVSIMGRGTEEKLSAKRDKNHVLFGGTKILQHTPDKTFPLRAPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSW ESGLFILFLLVFAIIAAGYVLKKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDD MEFCGVVGQTESTDLETDMTKVPACTAEILASCHALVFVDNKLVGDPLEKAALKGIDWSYKSDEKAMPKKGGGNAVQIVQRHHFASHLKRMAVVVRIQEE FLAFVKGAPETIQDRLVDLPSSYVDTYKKYTRQGSRVLALAFKNLPDMTVGEARSLDRDVVETGLTFAGFAVFNCPIRADSAAVLSELKNSSHDLVMITG DQALTACHVASQVHIISKPALILCPSSGQGYEWISPDEMEKISYGDKEAEELSETHDLCIGGDCIEMLQQSSAVLRVIPYVKVFARVAPEQKELILTTFK TVGRITLMCGDGTNDVGALKQAHVGVALLNAVPPTQSGNKSSETPKDGTPKLSKSKKPKPEVSNLNGESSSRGKAVSRSDSASQSAGNRHLTPAEMQRQR LKKLMEEMNEEGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFL FISQARPLPTLSAERPHPNIFCFYVFLSLMGQFAIHLFFLMSSVKSAEKYMPDECIEPDSNFHPNLVNTVSYMVSMMLQLATFAVNYIGHPFNQSITESK PFLYALLAASGFFTVITSDLFRNLNDWLKLVPLPPELRNKLLIWAVLMFLSCYTWERLLKWAFPGRIPAWKKRQRLAVANVEKKKHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T012200 [exp]	0	1

Compare expression of checked genes

Potri.T012200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.