Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G23610	258 / 2e-79		unknown protein
AT5G51330	166 / 2e-44	DYAD, SWI1	SWITCH1 (.1)
AT2G01810	51 / 2e-06		RING/FYVE/PHD zinc finger superfamily protein (.1)
AT1G66170	47 / 3e-05	MMD1	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
AT5G22260	45 / 0.0002	MS1	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.004G137000 [exp]	776 / 0	AT5G23610	276 / 1e-86	unknown protein
Potri.001G126901 [exp]	168 / 2e-44	AT5G51330	413 / 6e-134	SWITCH1 (.1)
Potri.003G106800 [exp]	59 / 6e-09	AT5G51330	432 / 6e-141	SWITCH1 (.1)
Potri.017G135200 [exp]	48 / 2e-05	AT1G66170	728 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.010G101300 [exp]	48 / 2e-05	AT5G22260	649 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.008G137200 [exp]	45 / 0.0002	AT2G01810	561 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.013G092000 [exp]	44 / 0.0002	AT1G33420	798 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10009659 [exp]	162 / 2e-42	AT5G51330	353 / 5e-112	SWITCH1 (.1)
Lus10009021 [exp]	159 / 9e-42	AT5G51330	370 / 3e-119	SWITCH1 (.1)
Lus10013251 [exp]	48 / 2e-05	AT5G22260	625 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10030773 [exp]	46 / 6e-05	AT5G22260	626 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10010966 [exp]	44 / 0.0002	AT1G66170	630 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10031357 [exp]	44 / 0.0004	AT1G66170	620 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)

PFAM info

Representative CDS sequence

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>Potri.T012300.1 pacid=42784449 polypeptide=Potri.T012300.1.p locus=Potri.T012300 ID=Potri.T012300.1.v4.1 annot-version=v4.1

ATGTCGCAGTCATACAAAGGTGCTTCAGAATCGCCTGAAAGTTGTGGCAGTGGAGAAGAAAGTACAAGGAAAGGGGCGTGTTTGTTGGAGATCAAACGCA

CTGGAATGGTACAATGGGGAATCAGCAGGCATATTGAGTCCATTGACAACAATCCTCCTCCAGGGGAAAATAACCCTCAACTTCCATCTCCCATTATCAA

GCATGGACAGAAGAACCCTCAACTTCCATCTGCCATCACCGGGCATGGGAATAACCCTCAATTTCCATCTGCCATTGTCAAAGAAGAAGTAAAAGATGAT

GAAGCTAGGACAACTGAGTCTCTTGTGTTGCCAGAAGCTAAGAAGAGGAAGCATCATGCCCTTCAGGAACCCAGAGAAGCACGAGCTGTGAGATGTTCTA

AAGCAAAGCAAACTAGCCTTGTTTATAAATGTAAGCAAATAAAGCGTGAGAATCCCATATCAGTAAAAAAGGAGAATGTCATGGATAGATGGTCAGTAGA

CAGGTATAATCAGGCGGAGAAAAGTATGTTGGAGGTCATGAAGGCTGAGGGGGCAGTGTTTGAGAAACCCATTTCCCGGTCAGCACTGCGAATGGTAGCT

CGTAAACACATTGGTGACACTGGACTCTTAGACCACCTACTGAAGCACATTGATGGTAAGGTGGCACCAGGTGGCACTGAGCGGTTCTGTCGGTGTTATA

ACACTCAAGGGAAAATGGAGTATTGGCTGGAGAGTGCTGACCTGGTTAAAATTAAGCAGGAGGCTGGAGTACCAGATCCAAACTATGTTCCCCCATCCTG

GTTGAGGCCTGGTAGTGTTGCGCCACTGGATTCTGTTTCTGCTGAAGAATTGACTCTGCTTAGAAAGGAAGTAGCAAAAATGACGAGGGATATGGAGGAG

CTGGTATCCAAGAATCAAGAGCAACATCAAGCTAACCATGTTGGGGATATTTACAAGGAATTTGTGGAATGGAGAGGTAAGACAGACCAGCGCCTGATGG

AGATTTCAAGTTCTTTGGGTGGTTTGCAGGGAAAGTATAAGGAGATGATGGCATGGAAGTCGAAGATTGAACAACAACTCAAGGAAATGTCAAATTCACT

AAGCAGCTTGCAATCATCAAAGCAATGCAATACCCTGAGTCCAGTTTCTGAAAGATGGGAGGACTGGTTGGAGAGCACCAACTTGGATAATATTCAAGGG

GAAGACTTTGCACCTTGGCTAGAGAACATGGATTTGGTTAATGTTGGGTATAATGCCTCATTGAAAGAACCCTACAATGCCTCTCAACTGTGGTTGAAAC

CCTGTGATAGCCCCTCTCAGGAGCCTGTTTGTGCAAGAGAGCTGGAGCTGCTCAAGGAAGAAATGGCCAAAATGAAAAGAGATATGCAGGGGGTGGTACC

CAATAGGATGGAGGAAGATAAAGCTAATATGACCTCAGATTCATCTGCCACGGCCAATTCCAAGACAGAACTTGACAATTCATTTTTTCAGGAAATGTTC

AAGGACTTCGGAAAATGGAGAAAGAAGATGGAGCAACAGATGCTTGAGATTTCCAATGCTGTCAATACTTTACAGGCATCAAAGTAA

AA sequence

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>Potri.T012300.1 pacid=42784449 polypeptide=Potri.T012300.1.p locus=Potri.T012300 ID=Potri.T012300.1.v4.1 annot-version=v4.1

MSQSYKGASESPESCGSGEESTRKGACLLEIKRTGMVQWGISRHIESIDNNPPPGENNPQLPSPIIKHGQKNPQLPSAITGHGNNPQFPSAIVKEEVKDD

EARTTESLVLPEAKKRKHHALQEPREARAVRCSKAKQTSLVYKCKQIKRENPISVKKENVMDRWSVDRYNQAEKSMLEVMKAEGAVFEKPISRSALRMVA

RKHIGDTGLLDHLLKHIDGKVAPGGTERFCRCYNTQGKMEYWLESADLVKIKQEAGVPDPNYVPPSWLRPGSVAPLDSVSAEELTLLRKEVAKMTRDMEE

LVSKNQEQHQANHVGDIYKEFVEWRGKTDQRLMEISSSLGGLQGKYKEMMAWKSKIEQQLKEMSNSLSSLQSSKQCNTLSPVSERWEDWLESTNLDNIQG

EDFAPWLENMDLVNVGYNASLKEPYNASQLWLKPCDSPSQEPVCARELELLKEEMAKMKRDMQGVVPNRMEEDKANMTSDSSATANSKTELDNSFFQEMF

KDFGKWRKKMEQQMLEISNAVNTLQASK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T012300 [exp]	0	1

Potri.T012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T012300 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T012300 coexpression network