Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G25610	116 / 5e-32	ATRD22, RD22	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
AT1G49320	85 / 7e-21	ATUSPL1	unknown seed protein like 1 (.1)
AT1G60390	81 / 8e-19	PG1	polygalacturonase 1 (.1)
AT1G70370	81 / 1e-18	PG2	polygalacturonase 2 (.1.2)
AT1G23760	78 / 9e-18	PG3, JP630	POLYGALACTURONASE 3, BURP domain-containing protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T012700 [exp]	240 / 1e-80	AT5G25610	214 / 2e-66	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.T012500 [exp]	238 / 8e-80	AT5G25610	208 / 4e-64	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.004G136000 [exp]	223 / 8e-74	AT5G25610	211 / 3e-65	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.004G136900 [exp]	223 / 9e-74	AT5G25610	211 / 2e-65	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.006G243700 [exp]	133 / 1e-38	AT5G25610	319 / 4e-107	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.006G243600 [exp]	133 / 3e-38	AT5G25610	299 / 2e-98	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.018G036700 [exp]	132 / 9e-38	AT5G25610	307 / 2e-101	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Potri.004G153100 [exp]	88 / 9e-22	AT1G49320	240 / 2e-78	unknown seed protein like 1 (.1)
Potri.009G114600 [exp]	87 / 2e-21	AT1G49320	220 / 5e-71	unknown seed protein like 1 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10007674 [exp]	131 / 3e-37	AT5G25610	353 / 2e-119	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Lus10022114 [exp]	127 / 1e-35	AT5G25610	357 / 5e-121	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Lus10003263 [exp]	116 / 3e-32	AT5G25610	266 / 7e-87	RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Lus10026333 [exp]	110 / 7e-31	AT1G49320	187 / 9e-59	unknown seed protein like 1 (.1)
Lus10042332 [exp]	103 / 2e-28	AT1G49320	115 / 7e-38	unknown seed protein like 1 (.1)
Lus10007011 [exp]	93 / 1e-23	AT1G49320	213 / 7e-68	unknown seed protein like 1 (.1)
Lus10006665 [exp]	92 / 4e-23	AT1G49320	177 / 3e-53	unknown seed protein like 1 (.1)
Lus10006667 [exp]	90 / 3e-22	AT1G49320	196 / 4e-61	unknown seed protein like 1 (.1)
Lus10042335 [exp]	89 / 4e-22	AT1G49320	184 / 6e-57	unknown seed protein like 1 (.1)
Lus10032324 [exp]	83 / 5e-20	AT1G49320	184 / 4e-57	unknown seed protein like 1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03181 [poplar] [flax]	BURP	BURP domain

Representative CDS sequence

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>Potri.T012400.1 pacid=42784466 polypeptide=Potri.T012400.1.p locus=Potri.T012400 ID=Potri.T012400.1.v4.1 annot-version=v4.1

ATGAGAATTCATTTTACTAATAGTGGGACCAAGGTTAGTTTCCTGCCTCGTCAGGTTGCAGAGTCTATACCATTTTCGAGTGACAAAGTACCAGAGATTT

TGAACTACTTTGCACTACAAGTCAACTCAAAAGAGGCTCAGGTTATTAGAGATGAAATAGGAGGATGTGAGGAGCCAAACATGGAAGGAGAAGAAAAATT

CTGTGCTACATCTCTGGAGTCATTAATTGATTTTAGTGTTGAAAGGCTTGGCCGAAATGTTCGCGTACTCTCCACTGACGCAGGCAAGAAGCAAGAATAT

ACTGTTTCGGCCAAAGCGACAATGATTGGAGATCATAAAGCAGCAGTGTGTCACAAGATGAGATATCCCTATGCAGTGCACTATGCCATGTAA

AA sequence

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>Potri.T012400.1 pacid=42784466 polypeptide=Potri.T012400.1.p locus=Potri.T012400 ID=Potri.T012400.1.v4.1 annot-version=v4.1

MRIHFTNSGTKVSFLPRQVAESIPFSSDKVPEILNYFALQVNSKEAQVIRDEIGGCEEPNMEGEEKFCATSLESLIDFSVERLGRNVRVLSTDAGKKQEY

TVSAKATMIGDHKAAVCHKMRYPYAVHYAM

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T012400 [exp]	0	1

Potri.T012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T012400 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T012400 coexpression network