Plant FIBer expression Database

CDPK5.2 (Potri.T012800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CDPK5.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35670 795 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1)
AT4G09570 791 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1)
AT5G23580 788 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1)
AT3G10660 722 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1)
AT4G35310 721 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1)
AT5G04870 721 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1)
AT2G17290 716 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
AT2G38910 700 / 0 CPK20 calcium-dependent protein kinase 20 (.1)
AT4G38230 698 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3)
AT5G19360 630 / 0 CPK34 calcium-dependent protein kinase 34 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G112500
[exp]
809 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1)
Potri.019G083200
[exp]
808 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1)
Potri.004G207300
[exp]
740 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Potri.009G168600
[exp]
735 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
Potri.008G014700
[exp]
723 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
Potri.010G244800
[exp]
718 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1)
Potri.016G066700
[exp]
717 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Potri.006G200600
[exp]
715 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1)
Potri.006G199400
[exp]
699 / 0 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029547
[exp]
841 / 0 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1)
Lus10039623
[exp]
839 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1)
Lus10009427
[exp]
776 / 0 AT4G09570 792 / 0.0 calcium-dependent protein kinase 4 (.1)
Lus10017911
[exp]
766 / 0 AT1G35670 793 / 0.0 calcium-dependent protein kinase 2 (.1)
Lus10014820
[exp]
757 / 0 AT1G35670 777 / 0.0 calcium-dependent protein kinase 2 (.1)
Lus10022986
[exp]
739 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1)
Lus10001384
[exp]
737 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1)
Lus10008958
[exp]
727 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1)
Lus10028862
[exp]
727 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1)
Lus10026559
[exp]
726 / 0 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF07714 PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
CL0220 EF_hand PF13499 EF-hand_7 EF-hand domain pair
Representative CDS sequence
>Potri.T012800.1 pacid=42784422 polypeptide=Potri.T012800.1.p locus=Potri.T012800 ID=Potri.T012800.1.v4.1 annot-version=v4.1
ATGGATGATCAACCAAAACCCTCATCGTCTAGTGCTCCACCACTGTCATCAAGGCCTAAATGGGTGCTTCCTTACAAGACCCAGAACTTAAGAGACCATT
ACAGCATAGGGAGGAAGCTTGGTCAAGGGCAGTTTGGTACGACTTTTCTTTGTACGCATAAAACCTCAGGAAAAAAGTATGCTTGCAAGTCAATACCAAA
AAGAAAGCTTCTTTGCAAAGAAGATTACGAGGATGTGTGGAGGGAAATCCAGATAATGCACCATTTGTCTGAGCACCCACATGTGGTTAGGATTAGTGGG
GCATACGAAGATATTTCTTGTGTTCACTTGGTGATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATAGGATTGTTAAGAAAGGGCATTATAGTGAAAAAG
AGGCTGCTAAATTGATGAAAACTATTGTTGGGGTTGTTGAGGCATGCCATTCACTTGGTGTCATGCATAGAGATCTTAAGCCTGAGAACTTCTTACTTCA
TAGTGTTGAGGAGGATGCTCCTCTTAAGGCCACTGATTTTGGGCTTTCTGTGTTCTACAAGCCAGGCGAAACTTTTTGTGATGTTGTTGGGAGTCCATAC
TATGTTGCGCCAGAGGTATTGCGCAAACATTATGGACCTGAAGCAGATGTATGGAGTGCAGGAATTATTTTGTACATACTATTAAGTGGTGTACCGCCTT
TTTGGGCCGAAACTGAAATCGGGATCTTCAAGCAGATATTGCAAGGCAAATTAGATTTTGAATCTGAACCATGGCCTAGTATTTCAGACAGTGCCAAGGA
TCTGATTAGAAAAATGCTTGAACGGAATCCAAAGAAAAGACTAACTGCTCATGAAGTACTCTGCCACCCATGGATCGTGGATGACAGGATTGCCCCAGAT
AAACCTCTTGATTCTGCTGTTTTATCGCGGCTGAAACAGTTCTCTGCAATGAACAAGCTTAAGAAGATGGCTTTGCGTGTCATAGCAGATAGGCTTTCTG
AAGAAGAGATTGGTGGTTTGAAAGAGTTGTTCAAAATGATAGACACAGACAACAGTGGAACAATAACTTTTGATGAATTAAAAGATGGATTAAGGCGAGT
AGGCTCTGAACTAATGGAGTCTGAGATAAAGGATCTGATGGATGCTGCTGATATTGACAACAGTGGAACAATTGATTATGGTGAATTTCTTGCTGCCACT
GTGCACTTGAATAAATTGGAGAGAGAGGAAAATTTAGTGTCTGCTTTCTCATTCTTCGACAAAGATAGCAGTGGATACATAACCATTGATGAGCTTCAAC
AAGCTTGCAAAGAGTTTGGCCTAAGCGAGCTCCACCTTGATGAGATGATTAAAGAAATCGATCAAGATAATGATGGACAAATAGACTATGGTGAATTTGC
TGCAATGATGAGGAAGGGCAATGGAGGAATCGGGAGGAGAACAATGAGAAGCACATTTAACTTGGGAGATGCCCTAGGACTCACTACCAATGGATCTAAA
ACATCTGATTGA
AA sequence
>Potri.T012800.1 pacid=42784422 polypeptide=Potri.T012800.1.p locus=Potri.T012800 ID=Potri.T012800.1.v4.1 annot-version=v4.1
MDDQPKPSSSSAPPLSSRPKWVLPYKTQNLRDHYSIGRKLGQGQFGTTFLCTHKTSGKKYACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHPHVVRISG
AYEDISCVHLVMELCEGGELFDRIVKKGHYSEKEAAKLMKTIVGVVEACHSLGVMHRDLKPENFLLHSVEEDAPLKATDFGLSVFYKPGETFCDVVGSPY
YVAPEVLRKHYGPEADVWSAGIILYILLSGVPPFWAETEIGIFKQILQGKLDFESEPWPSISDSAKDLIRKMLERNPKKRLTAHEVLCHPWIVDDRIAPD
KPLDSAVLSRLKQFSAMNKLKKMALRVIADRLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLRRVGSELMESEIKDLMDAADIDNSGTIDYGEFLAAT
VHLNKLEREENLVSAFSFFDKDSSGYITIDELQQACKEFGLSELHLDEMIKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRSTFNLGDALGLTTNGSK
TSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T012800
[exp]
0 1

Potri.T012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.