Gene [POPLAR] | FIBexDB

External link

JGI Phytozome v13

[genome browser]

Popgenie

AspWood

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G33420	625 / 0		RING/FYVE/PHD zinc finger superfamily protein (.1)
AT1G66170	281 / 2e-84	MMD1	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
AT5G22260	271 / 4e-81	MS1	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
AT2G01810	142 / 4e-35		RING/FYVE/PHD zinc finger superfamily protein (.1)
AT2G07714	94 / 1e-21		transcription factor-related (.1)
ATMG00550	67 / 5e-13	ATMG00550.1, ORF160	unknown protein
AT1G32810	59 / 1e-08		RING/FYVE/PHD zinc finger superfamily protein (.2)
AT4G10600	55 / 5e-08		RING/FYVE/PHD zinc finger superfamily protein (.1)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G137000 [exp]	1276 / 0	AT1G33420	637 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.004G134700 [exp]	1105 / 0	AT1G33420	634 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.013G092000 [exp]	689 / 0	AT1G33420	798 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.010G101300 [exp]	292 / 3e-89	AT5G22260	649 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.017G135200 [exp]	291 / 3e-88	AT1G66170	728 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.008G137200 [exp]	265 / 8e-79	AT2G01810	561 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.011G152600 [exp]	57 / 6e-08	AT1G32810	238 / 3e-64	RING/FYVE/PHD zinc finger superfamily protein (.2)
Potri.001G448900 [exp]	56 / 1e-07	AT4G10600	195 / 3e-56	RING/FYVE/PHD zinc finger superfamily protein (.1)

Flax homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039160 [exp]	650 / 0	AT1G33420	746 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10013775 [exp]	578 / 0	AT1G33420	650 / 0.0	RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10030773 [exp]	255 / 1e-74	AT5G22260	626 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10013251 [exp]	252 / 1e-73	AT5G22260	625 / 0.0	male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10031357 [exp]	245 / 4e-71	AT1G66170	620 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10010966 [exp]	243 / 2e-70	AT1G66170	630 / 0.0	MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10017342 [exp]	58 / 2e-08	AT1G32810	320 / 2e-92	RING/FYVE/PHD zinc finger superfamily protein (.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0390 [poplar] [flax]	zf-FYVE-PHD	PF00628 [poplar] [flax]	PHD	PHD-finger

Representative CDS sequence

Show only first row Show all

>Potri.T045600.1 pacid=42784437 polypeptide=Potri.T045600.1.p locus=Potri.T045600 ID=Potri.T045600.1.v4.1 annot-version=v4.1

ATGGTTGTCAACGGGAGACCGATAAAGAGGATGAAGAGGAGAGTCACAGCTGATCTCTACAACTTCCTCTCTTTCCCTTCCTCCCCTTCCTCTTCCTCTT

CCTCCTCGCCTCCTCCACCCCGCGGTCCTTTCAGATCCAACATCAGGTCGTTTTTAACCGAACACGCGCTGTTACCTCCGCCTTCCTCGCTGTTCCCTCA

CCTGCTCACGTGGCAGATCTCGTTTCAAGTCGGTGACTTGGTGGGGTGCGGCGGCGCGGAGGCTGGGGGCGGTGTGGTTTCTTTGGATGTGGTGGAGGAG

GATGTGGCTAGATCAAGATCTGTTTACTGTGATCAGTGTCGAGTTGTTGGTTGGAGTGGTCATCCAGTATGCAGTAAGCGTTACCATTTTATTATTAAAG

CTGATGGTAACTCCATTGGTGGGTATCATAAGCCATGCACTTGTTGCGGAGATGTCCTGCATTTGTCTGAATCAAGATGCAAGACATGCAATCATGTGAC

AACTGCGGATGATGTTGAAGAGTGGATCTATCACCAGTTGGAAGACACCACTCATCTCTTACATGGTGTCATCCATGCAAATGGTTTTGGGCACCTTCTT

AGGGTAAATGGAAAAGAAGGGGGCTCCAGGGTCCTTTCTGGAGTCCATATCATGGACTTTTGGGATCGGTTATGTAAAACTCTTGGAGTCAGAAAGGTCA

GTGTGATGGATGTATCAAAGAAGTATGGTTTAGAGTACAGGCTACTTCATGCTATCACCAAAGGCCATTCATGGTATGGTGACTGGGGCTATGAATTTGG

TGCTGGTAGTTTTGGTTTGACAGTCTATGCGTATAAGTCAGCTGTTGAAACACTCTCCAGCCTACCTTTGTCCATCTTTCTTTCTGAAGGGCAGAAACTG

CAAACTCGCTTGCTGGATATAATAAAGTTTTACCAATCTTTGTCAGATCGGGAGCTTGTAAATATTAGAGATCTTTTCTGTTATTTGACAAGTTTGATCC

ATGATGCTCACAAGTCTCCCTCAAGGGTTAATGATTCTAGCTGCAAGAAGCGCTGTATTTATGCATCAGGGATTTCGTCTTCATGGAGTAAGAGTGATAT

AGAACGTGTTGAAGAAGCCATGTTTAGAGTACTGCGAGCAGTTTCTGGGTCCAACTGGGTAAGTTGGCGCGCGCTTAGAGGTGCTGTTTGCAAAGTGGCT

CCTCCAGAGCTCCTTGATCATTGTCTAAAGGAAATAGGAGGGAAATTTGCAGCAGATGGAATGATTGTTAGGTCGCGATGCAATCCTAGTTCAGGTGCTT

TTGAGTACAGACTGGAACCAGGAAATCCTTCCCTAAATAGCCCTGCTACCACTGGCTCTTCTGTCATTACCTGCCCATCCGAAGGAAACCTTATACAGGA

CCTGAGATTCCTTTACGATAACATGCTACACCCTCAAACCATGATGAGCTCTGGACCTGAGGCCACAAGTGATGCAATCAGCTCAGCTAGAAAACTTCTT

GACTGCAAGCAGTTCATGAAAGACTACAACAAATGTGAAACAACGTCATCACCCTCAAATCCACCTACTATATGCCTGTCATGTCAGGTGGAAATTGTGG

ATCAGTTGGAAGAAAATGTCCCAGATCTTCCCCCAGAAATAATCGTCCTGCCCTCAAATGCTACAGTTTTTGATCTCAAGCTTGAAGCGTCCAGGGCATT

TCAAGATGTGTATTTGATGTTCAGGAGATTTCATGCCGAAGAGCTTCTTGGTTATAGTGGTGTTGATGATTCCACCCAGGTCAAGCTCTTGATAGGGTCA

ACTGAATCTGTTCGAGTCCAAGGTAGATGTCTGGGAAAAAATGGTCTTGGTAAATTTAGGATGGAAAGAGGAACTGAGAGATGGACTGTGGACTGCCGCT

GCGGTGCTAAGGATGATGATGGAGAAAGAATGTTAGCTTGTGATGTTTGTGGAGTGTGGCAGCACACTAGGTGTTCTGGCATCCCGGATTCGGATCCAGT

GCCCGCTAAGTTCGTCTGTGTGGGATGCAGAGGTGTCAGCTTGGTGACCAAACCTAGTGCAGTAGTAAAGTGA

AA sequence

Show only first row Show all

>Potri.T045600.1 pacid=42784437 polypeptide=Potri.T045600.1.p locus=Potri.T045600 ID=Potri.T045600.1.v4.1 annot-version=v4.1

MVVNGRPIKRMKRRVTADLYNFLSFPSSPSSSSSSSPPPPRGPFRSNIRSFLTEHALLPPPSSLFPHLLTWQISFQVGDLVGCGGAEAGGGVVSLDVVEE

DVARSRSVYCDQCRVVGWSGHPVCSKRYHFIIKADGNSIGGYHKPCTCCGDVLHLSESRCKTCNHVTTADDVEEWIYHQLEDTTHLLHGVIHANGFGHLL

RVNGKEGGSRVLSGVHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAITKGHSWYGDWGYEFGAGSFGLTVYAYKSAVETLSSLPLSIFLSEGQKL

QTRLLDIIKFYQSLSDRELVNIRDLFCYLTSLIHDAHKSPSRVNDSSCKKRCIYASGISSSWSKSDIERVEEAMFRVLRAVSGSNWVSWRALRGAVCKVA

PPELLDHCLKEIGGKFAADGMIVRSRCNPSSGAFEYRLEPGNPSLNSPATTGSSVITCPSEGNLIQDLRFLYDNMLHPQTMMSSGPEATSDAISSARKLL

DCKQFMKDYNKCETTSSPSNPPTICLSCQVEIVDQLEENVPDLPPEIIVLPSNATVFDLKLEASRAFQDVYLMFRRFHAEELLGYSGVDDSTQVKLLIGS

TESVRVQGRCLGKNGLGKFRMERGTERWTVDCRCGAKDDDGERMLACDVCGVWQHTRCSGIPDSDPVPAKFVCVGCRGVSLVTKPSAVVK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T045600 [exp]	0	1

Potri.T045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T045600 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T045600 coexpression network