Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 129 / 2e-31 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 110 / 2e-25 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 87 / 1e-17 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G61180 82 / 5e-16 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G12210 79 / 5e-15 RFL1 RPS5-like 1 (.1) AT5G47260 76 / 3e-14 ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases (.1) AT5G47250 75 / 7e-14 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 74 / 2e-13 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G19050 74 / 2e-13 NB-ARC domain-containing disease resistance protein (.1) AT5G05400 73 / 3e-13 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G137900 [exp] 1034 / 0 AT4G27220 354 / 4e-106 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 692 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.T045000 [exp] 679 / 0 AT4G27220 322 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136700 [exp] 678 / 0 AT4G27190 323 / 4e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 677 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.019G002800 [exp] 671 / 0 AT4G27220 317 / 9e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145578 [exp] 647 / 0 AT4G27220 311 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145562 [exp] 645 / 0 AT4G27220 224 / 1e-62 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 645 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029705 [exp] 55 / 5e-08 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10035976 [exp] 56 / 6e-08 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 55 / 1e-07 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10022464 [exp] 52 / 1e-06 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10003571 [exp] 50 / 4e-06 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10007814 [exp] 48 / 2e-05 AT5G36930 373 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 48 / 2e-05 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10024173 [exp] 48 / 2e-05 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10021973 [exp] 47 / 3e-05 AT2G34930 313 / 2e-95 disease resistance family protein / LRR family protein (.1) Lus10024150 [exp] 47 / 3e-05 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.T046001.1 pacid=42784411 polypeptide=Potri.T046001.1.p locus=Potri.T046001 ID=Potri.T046001.1.v4.1 annot-version=v4.1 ATGCTTAATAGACTTGAAAATGTCTGTTTATTAGAAATAATTAATGATGGTAGATGTGTCAAGATGCATGACTTGATTAGGGACATGGTAATCCAAATAC TAGAAGAAAACTCTCAAGTCAAAGCAGGTGCACAACTGGAAGAATTACCGGATGCAGAGGAGTGGACAGAGAATCTTACAACAGTTTCACTAATGCATAA CCAAATTGAAGAAATTCCTTTCTGCCATTCACCAAGGTGTCTGAATCTGTCAATCTTATTGCTATGTCATAATTACAGGTTGCGATTTGTGGCAGATTCA TTTTCCAAGAAATTGCATGGGCTCAACGTCCTTGATCTGTCTCACACAAATATTGAAAAATTGCCTAATTCTGTCTCTGATTTGGTCAAACTCGCTTCAT TGCTGCTCTCAAATTGTAAGAGGTTAAGGCATGTACCATCATTAAAAAATCTCGGGGAACTAAAGAGGTTAGATCTCTCTAGTACTCAGGCACTTAAAAA GATGCCTCAAGGCATGGAATTTCTATCCAACCTGAGGTGTCTTAGAATGAATGGATGTGGTAACAAGAAGTTTCCTGGTGGGATATTACCTAAAATCTCT CACTTGCAAGTCTTTGTGCTAGAGGTGGAGTTAATTTGTGTTCCAGTAACAGTTCAAGGAAAGGAAGTAGGATGCTTGAGGAAGTTGGGAACTTTGGAAT GCCATTTTGAAGGTCACTCTGACTATGTGGAGTTTCTCAAATCTCGGGAGAAGAACCAAGCACTAAGCACATACAAAATTTTTGTAGGACGGTTCAAGGA GTACGATGTAAGAACATATTGTAGTAATAAGACAGTTGGGTTGGGTAATTTGAGTGTCAACAGAGATGGAGATTTTCAGGTTAGGTTCCCAAATGATATT CAAGAACTGATCATTGAAAAGTGTGATGATGCAACTAGTTTGTGTGATGTTTTCTCTCTAAAGAAGTGTTCAATTGAATTGGAGGTCATCTCCATTTTGA ATTGCAATAGCATTGAGAGCTTGGTTTTATCTTCTTGGTTCTGCTCTGCTACACTTCCATCTCCATCGTATAACAGTATATTTTCTGGTCTTCAAAGGTT TAATTGTTCTGGTTGTAAGAGCATGAAGAAGTTATTCCCTCTTGTCTTGCTGCCAAGCCTCGTAAACCTGAAAGAGATTAGAGTTAAGCATTGTGAGAAA ATGGAGAAGATAATAGGTGGAACGAGATCAGATGAAGAAGGGGTTATGGGTGAAAAAAGCAGCAACAACGAATTCAAACTCCCTAAGTTAAGAATTTTAT ACTTGTCTGACTTACCAGAATTGAAAAGCATTTGCAGGGCAGAATTGATCTGCGATTCTCTCAAAGTAATTGAAGTAATAAATTGTCAGAAGCTAAAGAG GATCCCAATTTGTCTTCCATTACTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTGAAAAAATCAAAGTACATCCAAAAGAATGGTGGAAGTCAATG GTGGAGTGGGAGCATCCCAACGCTAAGGATGTCCTGTGTCCCTTTGTAGAGTTTTCTCAACCACAAGTAAGGAAGCAAGACGAAGACAAGTGA
AA sequence Show only first row Show all	>Potri.T046001.1 pacid=42784411 polypeptide=Potri.T046001.1.p locus=Potri.T046001 ID=Potri.T046001.1.v4.1 annot-version=v4.1 MLNRLENVCLLEIINDGRCVKMHDLIRDMVIQILEENSQVKAGAQLEELPDAEEWTENLTTVSLMHNQIEEIPFCHSPRCLNLSILLLCHNYRLRFVADS FSKKLHGLNVLDLSHTNIEKLPNSVSDLVKLASLLLSNCKRLRHVPSLKNLGELKRLDLSSTQALKKMPQGMEFLSNLRCLRMNGCGNKKFPGGILPKIS HLQVFVLEVELICVPVTVQGKEVGCLRKLGTLECHFEGHSDYVEFLKSREKNQALSTYKIFVGRFKEYDVRTYCSNKTVGLGNLSVNRDGDFQVRFPNDI QELIIEKCDDATSLCDVFSLKKCSIELEVISILNCNSIESLVLSSWFCSATLPSPSYNSIFSGLQRFNCSGCKSMKKLFPLVLLPSLVNLKEIRVKHCEK MEKIIGGTRSDEEGVMGEKSSNNEFKLPKLRILYLSDLPELKSICRAELICDSLKVIEVINCQKLKRIPICLPLLENGQPSPPPSLEKIKVHPKEWWKSM VEWEHPNAKDVLCPFVEFSQPQVRKQDEDK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T046001 [exp]	0	1

Compare expression of checked genes

Potri.T046001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.