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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G49160	1804 / 0	MET2, DMT1, DMT01, DDM2, METI, MET1	METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
AT4G08990	1732 / 0		DNA (cytosine-5-)-methyltransferase family protein (.1)
AT4G14140	1721 / 0	MET02, DMT2, DMT02, MET2	DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2)
AT4G13610	1538 / 0	MEE57	maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1)
AT1G69770	232 / 5e-63	CMT3	chromomethylase 3 (.1)
AT4G19020	224 / 3e-59	CMT2	chromomethylase 2 (.1)
AT1G80740	199 / 2e-52	DMT4, CMT1	DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G138000 [exp]	3151 / 0	AT5G49160	1800 / 0.0	METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Potri.004G134000 [exp]	2887 / 0	AT5G49160	1805 / 0.0	METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Potri.001G009600 [exp]	230 / 1e-61	AT1G69770	852 / 0.0	chromomethylase 3 (.1)
Potri.003G100000 [exp]	224 / 5e-59	AT4G19020	1017 / 0.0	chromomethylase 2 (.1)
Potri.003G215800 [exp]	87 / 5e-17	AT1G69770	221 / 7e-62	chromomethylase 3 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10004295 [exp]	2144 / 0	AT5G49160	1783 / 0.0	METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Lus10019220 [exp]	2056 / 0	AT5G49160	1706 / 0.0	METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1)
Lus10014315 [exp]	226 / 1e-60	AT1G69770	836 / 0.0	chromomethylase 3 (.1)
Lus10026024 [exp]	223 / 8e-60	AT1G69770	824 / 0.0	chromomethylase 3 (.1)
Lus10010796 [exp]	213 / 3e-57	AT4G19020	790 / 0.0	chromomethylase 2 (.1)
Lus10017720 [exp]	211 / 6e-56	AT1G69770	855 / 0.0	chromomethylase 3 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0063 [poplar] [flax]	NADP_Rossmann	PF00145 [poplar] [flax]	DNA_methylase	C-5 cytosine-specific DNA methylase
CL0063 [poplar] [flax]		PF01426 [poplar] [flax]	BAH	BAH domain
CL0063 [poplar] [flax]		PF12047 [poplar] [flax]	DNMT1-RFD	Cytosine specific DNA methyltransferase replication foci domain

Representative CDS sequence

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>Potri.T046100.2 pacid=42784404 polypeptide=Potri.T046100.2.p locus=Potri.T046100 ID=Potri.T046100.2.v4.1 annot-version=v4.1

ATGGGATCTTCATCAATATTGGATACAACAACAAATGACCCAGTTGATAATACTATTTCTTCTTCATCATCTGTAGGTATGAGGAAGAACAAAAAAGGGA

AACAAAAATCTTCAGTGTCTAATGTAAAGAAAGAAGTGCCAGAAAAAAACACAAAAGGGAAGAAGAGAAATTCCCCTGATACCAACAAGGAAGAGCCTAC

TGGTGGCGATGGTTCACTGAAAAGGCCTAAGAGAGCTGCTGCATGCAAAGATTTCAAGGAGAAATCTGTACGATTGCATGAAGAGAAGTCTTATGTTGTT

GAATCAAAGAAAGAACAAGTTGTCGATGAAGAAATTCTAGCTGTTCGTTTGACTCAAGGGCAAGAAGAGGGTCGCCCAAACAGGAGATTGATTGATTTTG

TTGTGCATGATGCAAATGGCAACCCACAGCCCTTGGAGATGGTTGAAGTTGATGATATGTTTATCTCTGGCATTATAATGCCTCATGAGGAAAGCATTGA

CAAGGAAAAAGAAGTGCATGTTAGGTGTGATGGCTTTGGAAGGATAGAAGCATGGGATATCTCTGGTTATGAAGATGGATCCCCAGTCATTTGGCTAAGT

ACTGAAGTGGCAGATTATGACTGCATTAAGCCTGCTGGTGGCTACAAGAAGTTCTTTGATCATTTCTTCCAGAAGGCACTTGCTTGTGTTGAAGTCTACA

AAAAACTCTCAAGATTCTCTGGAGGAAACCCTGAATTCACCCTTGATGAGTTGCTTGCTGGGGTTGTGCGAGCAATGAGTGGAAATAAGTGTTTCTCTGG

TGCAGTATCCATCAAGAATTTCCTCATTTCTCAGGGTGAATTTATTTATCACCAAATAATTGGTTTGGATGAGACTTCCACAAAGAATGATAAGAAATTT

GCAGACTTGCCTGTTCTTGTAGCCTTGAGAGATGAAAGTCGCAATCATGGAAATGTTCTGATAGCAAAAGCAGCAAATTCTGGTGGGAACTTGGTGATTG

GTCCAGAATCTGTGGATGGTGCTGTTGTGAATCAGTCTAACCAATCCAGTACCACAGTTGAGGAAGACGAGGATGCAAAGTTAGCAAGATTATTGCAGGA

AGAAGAGTATTGGCAGTCTAATATGAGGCAGAAGAAAAGTCGTGGTTCAGTTTCTGCATCCAACACAATCTACATCAAAATTAATGAAGATGAGATTGCA

AATGACTACCCTCTCCCTGTGTTTTACAAACACTCTAATGAAGAAACCGATGAGTATATAGCTGTTGCAAGTGATGATGTAATTGACCACCCTGATGATC

TCCCTAGAAGAATGCTTCATAACTGGTCACTTTATAACTCAGACTCAAGGTTGATTTCTTTGGAGCTTCTTCCAATGAAACCTTGTGAAGACATTGATGT

CACCATCTTTGGATCAGGAAGTATGACTGAAGATGACGGAAGCGGATTCTGTCTTGATGATGGTCCTGATCAGTCTTCTTCAAGGGGTTTGGAGGCTCAG

GATGACATGGGTTTGCCGATATTTTTGAGTGCGATAAAGGAGTGGATGATTGAGTTTGGATCATCAATGATTTTTATATCACTACGCACGGACATGGCCT

GGTATAGACTTGGAAAGCCATCAAAACAATATGCTTCCTGGTATAAGCCAGTCCTAAAAACAGTTAAGCTTGCAAGAAGCATCATTACATTGTTGAAGGA

GCAAAGTCGAGTATCACGGCTTTCTTTTGCAGATGTAATCCGGAAAGTGTCTGAGTTCAAGAAGGATCATCATGCTTATATTTCTTCTGATCTAGCAGCT

GTTGAGAGGTACGTGGTAGTGCATGGACAGATAATACTACAGCTTTTTGCTGAGTTTCCAGATCAGAAGATCAAGAAATGTGCTTTTGTGGTCGGTTTGA

CTCGTATGATGGAGGAGAGGCACCATACTAAATGGGTAGTGAACAAAAAAGCAATTGTGCAAAAGTGTCATTCCAATTTGAATCCTCGGGCTGCAATGGA

TACTGTTGCTTCTGGAACGTCCAAGAGGAAGCTTATGCAGGCAACAACAACAAGACTGATCAACAGAATATGGGGGGAATATTATTCAAACTATTCTCCA

GAGGATTTGAAAGAGGGAAATGATTGTGATGTAAAAGAAGAAGATGAACTTGAGGAACAGGATGAAAATGAAGATGATGATAAAGAGGTGGTGGTAGAGA

AAACACTAAAACCTTATTCAGTGTTTGAACATTGTAAATCCCATACTTCACAAAAAGAGGTAAGATGGGATGGGAATCCTGTAAGAAAAACATCTTCTGG

AGAAGACATTTACAAGCAAGCCATTGTTTGTGGACAGGTCATTGTGGTGGGGGCTGCTGTCTTAGTAGAGGTTGATGAACCAGATGAACTTCCTGCCATT

TATTTTGTGGAGTACATGTTTGAAACAAGAAATGGAAGTAAAATGTTTCATGGGAGAATGATGAAGTGGGGATCTGAGACAGTTCTTGGTAACACTGCCA

ATGATAGAGAGGTTTTCTTAACAAATGAATGCATGAATTATAAACTACAGGATGTTAAGCAAGCAATAATTCTGGAAGTTCGAAAAAGGCCTTGGGGACA

TCATCACAGGAAAGATAATGCCAATGCTGATAGAATTGATAGGGAAAAGGCAGAAGAGAGGAAAAAGAAAGGATTGCCACTAGAATATTACTGTAAAAGC

TTGTACTGGCCAGAAAGGGGTGCTTTCTTCACTCTTCCATTTGATACTATGGGTCTTGGCTCTGGTGTCTGCCACTCTTGTAACTTAAAAATATCTGAAG

AAGACAAGAATATTTCCAAAGTGAATTCTTCTCAAACAGGATTTTCATACAAAGGAACTGAGTACTCAGTCCATGATTTTGTCTATGTGAACCCTCATCA

ATTTGCCGTGGAAAGTGGGGAGACTGAAACTTTTAAGGGTGGAAGGAATGTTGGATTGAAGCCTTATGCTGTGTGCCAGTTATTGGAAGTAGTTCCAATG

GAAACAAAACAATCTGAAACAAGATCCACTGAGGTCAAAGTTCAAAGATTTTTCAGACCAGATGATATTTCACCTGAAAAGGCATATTGTTCTGATATTC

GTGAGATATATTATAGTGAAGAAACACATCTTTTATCTGTTGAGGTGATTGAAGGGAAATGTGAAGTCAGAAAGAAAATTGATATTCCCACATGCAGTGC

TCCTGCAATCTTTGATCATACCTTCTTCTGCGAGCACATGTATGATCCTTCCAATGGGTCCCTCAAGCAGCTACCAGCTCATATCAAATCAAAGTTTTCA

GCTGTGAGTAAAGATGGTGATGTTGCAAGTAGAAAGAGAAAGGGAAAGTCTAAAGAAGGAGAAAATGATACAGAAGATGACAAACAATTGGAAGCATCTC

CAGAGTACCGTTTGGCCACTTTGGATATTTTTGCTGGTTGTGGTGGCTTGTCTGAGGGATTGCAGCAAGCTGGTGTCTCAACAACCAAGTGGGCTATTGA

ATATGAAGAGCCTGCTGGGGAAGCATTTAAACTCAATCATGCAGAATCATTGATGTTTATTAATAATTGCAATGTGATCCTCAGGGCTGTGATGGAGAGG

TGTGGAGATGCAGATGACTGTATTTCTACTTCTGAGGCTGCTAAATTGGCTTCATCACTTGATGCAAAGGTGATCAATGGTTTGCCATTGCCAGGGCAGG

TGGATTTCATCAATGGAGGGCCTCCATGTCAGGGCTTCTCTGGAATGAATAGGTTTAATCAGAGCACTTGGAGTAAAGTTCAATGTGAGATGATCTTAGC

ATTCTTATCCTTTGCTGATTACTTCCGCCCAAAGTATTTCCTCTTAGAGAATGTGAGGAACTTTGTATCTTTCAATAAAGGACAGACTTTCCGTTTAACT

ATTGCTTCTCTTCTTCAGATGGGTTATCAGGTGAGATTTGGAATTTTGGAGGCCGGAGCATATGGAGTTTCTCAGTCACGCAAACGTGCCTTTATATGGG

CAGCCTCTCCTGAGGAGATACTCCCAGAATGGCCAGAGCCAATGCATGTTTTTGCTGCCCCAGAGTTAAAAATAACATTGTCTGAGAAGTCACAATATGC

TGCTGTTAGGAGTACTGCTTATGGAGCCCCTTTCCGTGCAATAACTGTCAGAGATACAATTGGTGATCTCCCAGATGTGGCGAATGGTGCTTCTAAGACA

AATTTGGAGTACGGAAATGATCCTATCTCTTGGTTTCAAAAGAAAATTCGAGGCGACATGGTTGTCTTGACTGACCATATATCAAAAGAAATGAATGAGC

TGAATCTTATTAGATGCAAGAATATCCCAAAGCGGCCAGGTGCTGATTGGCGTGATCTCCCAGATGAGAAGGTCAAATTGTCTACTGGGCAAATGGTTGA

TTTGATACCATGGTGCCTTCCAAACACAGCTAAACGACACAATCAGTGGAAGGGGCTATTTGGAAGATTGGATTGGGAAGGGAACTTCCCAACATCAATA

ACAGATCCCCAGCCAATGGGTAAGGTGGGGATGTGCTTTCACCCTGAGCAGGACAGGATTCTTACTGTTCGTGAATGTGCACGATCTCAAGGATTCCCAG

ATAACTATCAGTTTTTCGGTAACATTCAACACAAGCATCGGCAAATTGGAAATGCTGTTCCTCCTCCTCTAGCATATGCGTTGGGAAGGAAACTTAAGGA

AGCACTGGATAGTAAGAGGCAGAAATAG

AA sequence

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>Potri.T046100.2 pacid=42784404 polypeptide=Potri.T046100.2.p locus=Potri.T046100 ID=Potri.T046100.2.v4.1 annot-version=v4.1

MGSSSILDTTTNDPVDNTISSSSSVGMRKNKKGKQKSSVSNVKKEVPEKNTKGKKRNSPDTNKEEPTGGDGSLKRPKRAAACKDFKEKSVRLHEEKSYVV

ESKKEQVVDEEILAVRLTQGQEEGRPNRRLIDFVVHDANGNPQPLEMVEVDDMFISGIIMPHEESIDKEKEVHVRCDGFGRIEAWDISGYEDGSPVIWLS

TEVADYDCIKPAGGYKKFFDHFFQKALACVEVYKKLSRFSGGNPEFTLDELLAGVVRAMSGNKCFSGAVSIKNFLISQGEFIYHQIIGLDETSTKNDKKF

ADLPVLVALRDESRNHGNVLIAKAANSGGNLVIGPESVDGAVVNQSNQSSTTVEEDEDAKLARLLQEEEYWQSNMRQKKSRGSVSASNTIYIKINEDEIA

NDYPLPVFYKHSNEETDEYIAVASDDVIDHPDDLPRRMLHNWSLYNSDSRLISLELLPMKPCEDIDVTIFGSGSMTEDDGSGFCLDDGPDQSSSRGLEAQ

DDMGLPIFLSAIKEWMIEFGSSMIFISLRTDMAWYRLGKPSKQYASWYKPVLKTVKLARSIITLLKEQSRVSRLSFADVIRKVSEFKKDHHAYISSDLAA

VERYVVVHGQIILQLFAEFPDQKIKKCAFVVGLTRMMEERHHTKWVVNKKAIVQKCHSNLNPRAAMDTVASGTSKRKLMQATTTRLINRIWGEYYSNYSP

EDLKEGNDCDVKEEDELEEQDENEDDDKEVVVEKTLKPYSVFEHCKSHTSQKEVRWDGNPVRKTSSGEDIYKQAIVCGQVIVVGAAVLVEVDEPDELPAI

YFVEYMFETRNGSKMFHGRMMKWGSETVLGNTANDREVFLTNECMNYKLQDVKQAIILEVRKRPWGHHHRKDNANADRIDREKAEERKKKGLPLEYYCKS

LYWPERGAFFTLPFDTMGLGSGVCHSCNLKISEEDKNISKVNSSQTGFSYKGTEYSVHDFVYVNPHQFAVESGETETFKGGRNVGLKPYAVCQLLEVVPM

ETKQSETRSTEVKVQRFFRPDDISPEKAYCSDIREIYYSEETHLLSVEVIEGKCEVRKKIDIPTCSAPAIFDHTFFCEHMYDPSNGSLKQLPAHIKSKFS

AVSKDGDVASRKRKGKSKEGENDTEDDKQLEASPEYRLATLDIFAGCGGLSEGLQQAGVSTTKWAIEYEEPAGEAFKLNHAESLMFINNCNVILRAVMER

CGDADDCISTSEAAKLASSLDAKVINGLPLPGQVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLT

IASLLQMGYQVRFGILEAGAYGVSQSRKRAFIWAASPEEILPEWPEPMHVFAAPELKITLSEKSQYAAVRSTAYGAPFRAITVRDTIGDLPDVANGASKT

NLEYGNDPISWFQKKIRGDMVVLTDHISKEMNELNLIRCKNIPKRPGADWRDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSI

TDPQPMGKVGMCFHPEQDRILTVRECARSQGFPDNYQFFGNIQHKHRQIGNAVPPPLAYALGRKLKEALDSKRQK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T046100 [exp]	0	1

Potri.T046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T046100 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T046100 coexpression network