Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G49890	947 / 0	ATCLC-C, CLC-C	chloride channel C (.1)
AT5G33280	764 / 0		Voltage-gated chloride channel family protein (.1)
AT5G40890	671 / 0	ATCLCA, CLCA, ATCLC-A	CHLORIDE CHANNEL-A, chloride channel A (.1.2)
AT3G27170	658 / 0	ATCLC-B, CLC-B	chloride channel B (.1)
AT5G26240	444 / 1e-144	ATCLC-D, CLC-D	chloride channel D (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G138100 [exp]	1331 / 0	AT5G49890	935 / 0.0	chloride channel C (.1)
Potri.004G228300 [exp]	1000 / 0	AT5G49890	983 / 0.0	chloride channel C (.1)
Potri.003G001500 [exp]	999 / 0	AT5G49890	950 / 0.0	chloride channel C (.1)
Potri.006G064000 [exp]	800 / 0	AT5G33280	1181 / 0.0	Voltage-gated chloride channel family protein (.1)
Potri.018G124100 [exp]	790 / 0	AT5G33280	1167 / 0.0	Voltage-gated chloride channel family protein (.1)
Potri.001G331700 [exp]	664 / 0	AT3G27170	1259 / 0.0	chloride channel B (.1)
Potri.010G090100 [exp]	462 / 2e-151	AT5G26240	1149 / 0.0	chloride channel D (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10007433 [exp]	980 / 0	AT5G49890	1190 / 0.0	chloride channel C (.1)
Lus10024466 [exp]	976 / 0	AT5G49890	1189 / 0.0	chloride channel C (.1)
Lus10038118 [exp]	759 / 0	AT5G33280	1140 / 0.0	Voltage-gated chloride channel family protein (.1)
Lus10012526 [exp]	676 / 0	AT3G27170	1264 / 0.0	chloride channel B (.1)
Lus10002453 [exp]	484 / 4e-160	AT5G26240	1278 / 0.0	chloride channel D (.1)
Lus10010531 [exp]	468 / 2e-153	AT5G26240	1242 / 0.0	chloride channel D (.1)
Lus10041567 [exp]	181 / 4e-51	AT3G27170	456 / 1e-156	chloride channel B (.1)
Lus10041568 [exp]	153 / 3e-42	AT5G40890	273 / 1e-87	CHLORIDE CHANNEL-A, chloride channel A (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF00571 [poplar] [flax]	CBS	CBS domain
		PF00654 [poplar] [flax]	Voltage_CLC	Voltage gated chloride channel

Representative CDS sequence

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>Potri.T046200.2 pacid=42784414 polypeptide=Potri.T046200.2.p locus=Potri.T046200 ID=Potri.T046200.2.v4.1 annot-version=v4.1

ATGAGAGAAAGAAAAATGGACTTGGATAACAGGGCCACTCATGGACTGCATACTGTTAAAGAAGAAGATGTGGAGGGAGACGTTGAAAATGATGCCAAAG

GAATACTAAATTCGTACAACGGTGCTTACAGTACTGAACCCCTCTTGGTGAAAAGGAGGAATACAACATCCCAGACTGCCATTGTTGGTGCCAACATTTC

TCTTATTGAAAGCCTTGACTACGAGATTGCTGAAAATGAATTATTTAAACAAGATTGGAGATCAAGAAAGAAAGTTCAGATATTTCAGTATATTTTACTG

AAGTGGGCATTTGCACTTCTTATTGGCCTTTTCACAGGACTTGTTGGCTTTTTTAATAATATCGCAATTGAGAACATATCTGGTTTCAAGTTGTTGCTGA

CTAATAAGCTCATGAGAAAGCAACAATATTACAAGGCTTTTGCAGCATTTGCTGGTTGCAACATGGTGTTGGCGGCTGCTGCTGCAGCTCTATGCGCTTT

CATTGCTCCAGCAGCAGCAGGTTCTGGTATTCCTGAAGTGAAAGCCTATCTTAATGGCATTGATGCTCATTCTATACTGGCTCCTGGTACCCTATTTGTA

AAGATTCTTGGTTCTATTCTCGGTGTTTCTGCTGGATTTGTTGTGGGTAAAGAAGGGCCTATGGTTCACACTGGTGCATGCATAGCCTCTTTATTAGGGC

AGGGGGGTTCTCGCAAATACCATTTGACATGGACGTGGCTCAGATATTTCAAAAATGATCGTCAGAGACGAGATTTGATCACTTGCGGAGCTGCTGCTGG

TGTGGCTGCTGCTTTTCGTGCTCCAGTTGGAGGCGTTCTTTTCGCTCTTGAAGAAGCAGCTTCATGGTGGCGGAGTGCTCTTCTTTGGAGAACTTTCTTC

ACTACTGCAGTGGTTGCTATAGTTTTGAGAGCTTTTATGGAATTTTGCGCTACTGGAAAGTGTGGGCTTTTTGGGAAAGGAGGTCTAATAATGTATGATG

TGAGTTCAGAAAAGGTACAATATAGCGGTCCGGATGTTTTAGCTGTGATACTCTTAGGCATCGTCGGGGGGATTTTTGGAAGCTTGTATAACTATCTTGT

GGATAAGGTTCTCCGTACTTACAGCATCATCAACGAAAAAGGTGCTGCTTTTAAAATCTCACTTGTTATTGCCATCGCCCTGTTGACATCTTGTTGTTCT

TACGGCCTGCCTTGGTTCGGGAGGTGCATCCCCTGCCCTACTCATATAACAGTGAGTTGTCCTAACACTGATGAATCTGGAAATTACAAAAGTTTCCAGT

GCCCACCTGGTTACTACAATGACATTGCCTCCCTTTTTCTTAGCACTAATGATGATGCTATTCGCAACCTCTTTAGCGCCAGCACTAAAATAGAATTTCG

TATATCCACTCTCTTCCTCTTTTTCTCTGCTGTTTATTGCCTTGGCATTGTTACATATGGAATTGCTATCCCATCTGGACTTTTCATCCCCGTTATTTTA

GCTGGAGCTTGCTATGGCCGTCTTGTTGGGAGACTATTTAGATCCATCTCTAACCTTGACACCGGTCTCTTTGCCTTACTTGGAGCTGCATCCTTCCTTG

GTGGTACCATGAGAATGACAGTTTCCCTTTGTGTAATACTGCTCGAACTCACTAATGATTTATTGTTGCTTCCCCTTGTGATGTTGGTTCTCCTTATCTC

AAAAACTGTGGCTGATAACTTCAACAAGGGTGTCTATGACCATATTGTGAAATTGAAAGGATTGCCTTACATGGAGGCCCATGCAGAACCTTACATGAGG

CATTTGGTTGCACGTGATGTTGTCTCTAGTCCATTGGTAACTTTTCTTGGTATTGAAAAGGTGGGCAATATACTGCATGCTTTGAGGACAACTGGACATA

ATGGGTTCCCAGTGATTGATGAACCACCTTTCTCAGATGCACCAGAACTGTGCGGCCTTGTCTTGAGGTCACATTTGCTTGTTTTGCTTAAAGGCAAGAA

TTTTTCAAGGGAAAGGATACCTGCTGGTCAAGAGATCTTGCGTAGATTTGCAGTATTTGATTTTGCTAAAGCAGGATCTGGGAAGGGTGTCAAGTTAGAG

GATCTGGATATTGAAGAGGAAGAGATGGAGATGTATGTAGATCTTCATCCAATTAGCAATGCATCCCCGCACACCGTGGTTGAGACAATGTCACTTGCCA

AAGCTGCAATTCTCTTTCGACAAATTGGTCTCAGGCACATGTGTGTAGTGCCAATAAGTCAAGGGAGACCTCCAATTGTTGGGATTTTGACTCGACATGA

CTTCATGCCAGAGCATATCTTGGGACTCTACCCTCATATCAAGCCTCACAAGTAG

AA sequence

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>Potri.T046200.2 pacid=42784414 polypeptide=Potri.T046200.2.p locus=Potri.T046200 ID=Potri.T046200.2.v4.1 annot-version=v4.1

MRERKMDLDNRATHGLHTVKEEDVEGDVENDAKGILNSYNGAYSTEPLLVKRRNTTSQTAIVGANISLIESLDYEIAENELFKQDWRSRKKVQIFQYILL

KWAFALLIGLFTGLVGFFNNIAIENISGFKLLLTNKLMRKQQYYKAFAAFAGCNMVLAAAAAALCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPGTLFV

KILGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWTWLRYFKNDRQRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFF

TTAVVAIVLRAFMEFCATGKCGLFGKGGLIMYDVSSEKVQYSGPDVLAVILLGIVGGIFGSLYNYLVDKVLRTYSIINEKGAAFKISLVIAIALLTSCCS

YGLPWFGRCIPCPTHITVSCPNTDESGNYKSFQCPPGYYNDIASLFLSTNDDAIRNLFSASTKIEFRISTLFLFFSAVYCLGIVTYGIAIPSGLFIPVIL

AGACYGRLVGRLFRSISNLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADNFNKGVYDHIVKLKGLPYMEAHAEPYMR

HLVARDVVSSPLVTFLGIEKVGNILHALRTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSRERIPAGQEILRRFAVFDFAKAGSGKGVKLE

DLDIEEEEMEMYVDLHPISNASPHTVVETMSLAKAAILFRQIGLRHMCVVPISQGRPPIVGILTRHDFMPEHILGLYPHIKPHK

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T046200 [exp]	0	1

Potri.T046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T046200 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T046200 coexpression network