Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G26360	1030 / 0		TCP-1/cpn60 chaperonin family protein (.1)
AT3G11830	293 / 3e-92		TCP-1/cpn60 chaperonin family protein (.1.2)
AT1G24510	291 / 1e-91		TCP-1/cpn60 chaperonin family protein (.1.2)
AT3G18190	264 / 3e-81		TCP-1/cpn60 chaperonin family protein (.1)
AT3G20050	238 / 4e-71	ATTCP-1	T-complex protein 1 alpha subunit (.1)
AT3G03960	215 / 1e-62		TCP-1/cpn60 chaperonin family protein (.1)
AT5G20890	211 / 3e-61		TCP-1/cpn60 chaperonin family protein (.1)
AT3G02530	204 / 9e-59		TCP-1/cpn60 chaperonin family protein (.1)
AT5G16070	202 / 7e-58		TCP-1/cpn60 chaperonin family protein (.1)
AT4G33240	102 / 2e-22	FAB1A	FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G138200 [exp]	1134 / 0	AT5G26360	1029 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Potri.004G133800 [exp]	1113 / 0	AT5G26360	1028 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Potri.004G195300 [exp]	301 / 5e-95	AT3G11830	985 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Potri.010G051700 [exp]	288 / 2e-90	AT1G24510	989 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Potri.009G157400 [exp]	287 / 1e-89	AT3G11830	929 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Potri.008G182300 [exp]	281 / 9e-88	AT1G24510	1014 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Potri.012G051300 [exp]	270 / 2e-83	AT3G18190	942 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Potri.015G042600 [exp]	265 / 9e-82	AT3G18190	922 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Potri.002G142700 [exp]	244 / 2e-73	AT3G20050	994 / 0.0	T-complex protein 1 alpha subunit (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10021150 [exp]	1055 / 0	AT5G26360	1046 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Lus10017853 [exp]	1052 / 0	AT5G26360	1041 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Lus10034682 [exp]	1025 / 0	AT5G26360	1016 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Lus10040514 [exp]	983 / 0	AT5G26360	996 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)
Lus10006457 [exp]	295 / 7e-93	AT1G24510	1009 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Lus10011401 [exp]	294 / 9e-93	AT1G24510	1012 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Lus10008406 [exp]	288 / 2e-90	AT3G11830	1011 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Lus10036947 [exp]	286 / 1e-89	AT1G24510	1004 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Lus10026773 [exp]	260 / 5e-80	AT3G11830	920 / 0.0	TCP-1/cpn60 chaperonin family protein (.1.2)
Lus10008670 [exp]	244 / 8e-74	AT3G18190	967 / 0.0	TCP-1/cpn60 chaperonin family protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF00118 [poplar] [flax]	Cpn60_TCP1	TCP-1/cpn60 chaperonin family

Representative CDS sequence

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>Potri.T046300.2 pacid=42784457 polypeptide=Potri.T046300.2.p locus=Potri.T046300 ID=Potri.T046300.2.v4.1 annot-version=v4.1

ATGCACGCTCCAGTTCTCGTTCTTAGGGATTCGTTGAAACGGGAATCAGGAAGGAAGGTACATCATGCCAACATACAGGCTGCAAAGGCAGTTGCCGATA

TTATCAGGACCACTTTAGGTCCTCGTTCCATGTTGAAGATGCTTCTCGATGCCAGCGGTGGTATTGTTGTCACCAACGACGGCAATGCCATCCTGCGCGA

GTTAGATCTGGCTCATCCTGCTGCTAAATCCATGATTGAATTAAGTCGCACTCAAGACGAAGAAGTTGGTGACGGAACTACCTCCGTCATTGTTCTCGGA

GGAGAGATGCTTCATGTTGCTGAAGCCTTCATCGAAAAGAACTATCATCCTACTGTCATATGCCGAGCCTACAGTAAAGCTTTGGAGGATGCTATTGCTG

TGATTGACAAAATTGCTATGTCCATTGATGTCAACGATCGTCCTACAATGTTGGGGCTGGTCAAGAGTTGCATTGGCACAAAGTTCACTAGTCAATTTGG

GGACTTAATTGCTGATCTAGCAATTGATGCCACCTCAATAGTTGGTGTGGACCTTGGTCAAGGAATGCGTGAAGTTGACATCAAGAAGTACATTAAGGTT

GAGAAGGTGCCTGGTGGCCAGTTGGAAGATTCAAAAGTTCTTAAAGGGGTTATGTTTAACAAAGATGTAGTTGCCCCTGGAAAAATGAAAAGAAAAATTG

TGAACCCACGTATTATTCTTCTTGATTGCCCTGTTGAATACAAGAAAGGAGAGAACCAGACAAACGCGGAGCTGGTTCGAGAAGAAGACTGGGAAGTCCT

GTTGAAAATGGAAGAGGAATACATAGAGAATATGTGTGCGCAGATACTAAAGTTGAAACCAGATTTGGTAATCACAGAGAAAGGTCTCAGTGATTTGGCA

TGCCACTATCTGAGCAAAGCTGGTGTTAGTGCAATCAGGAGGCTGAGGAAGACTGATAATAACAGAATTGCCAAGGCATGTGGGGCCACTATTGTGAACA

GACCAGATGAGTTGCAAGAGTCTGATGTTGGTACTGGGGCTGGTTTATTCGAGGTTAAGAAAATTGGGGATGAATTCTTTGCCTTCATTGTTGATTGCAA

AGATCCAAAGGCTTGTACTGTTCTCTTGAGAGGTGCCAGCAAGGACCTTCTGAATGAAGTGGAAAGAAACTTGCAGGATGCCATGTCTGTAGCAAGAAAT

ATACTAAAGAATCCAAAACTCCTTCCTGGTGGGGGTGCTACAGAATTAACTGTATCTGCTGCTCTGAAGCAAAAAAGCTCTTCTATTGAAGGCATAGAAA

AGTGGCCTTATGAAGCTGCTGCTATAGCTTTTGAGGCTATACCAAGAACGTTGGCTCAGAATTGTGGTGTTAATGTGATCCGAACCATGACTGCTCTGCA

AGGGAAGCATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGGAACACTGGTGAAATTACTGATATGAAAGAGAGGAAGATATGGGATGCCTACAAT

GTCAAGGCACAAACCTTCAAAACAGCAATCGAGTCTGCTTGCATGCTTCTGAGGATTGATGACATTGTGAGTGGAATCAAGAAGAAGCAGGCCCCTGGAG

CGCAGGGTCCGTCCAAGCCTAAGATTGAGACAGAAGCAGATGCAGACAGCGAGCAGATACTTCCTGACTGA

AA sequence

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>Potri.T046300.2 pacid=42784457 polypeptide=Potri.T046300.2.p locus=Potri.T046300 ID=Potri.T046300.2.v4.1 annot-version=v4.1

MHAPVLVLRDSLKRESGRKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLG

GEMLHVAEAFIEKNYHPTVICRAYSKALEDAIAVIDKIAMSIDVNDRPTMLGLVKSCIGTKFTSQFGDLIADLAIDATSIVGVDLGQGMREVDIKKYIKV

EKVPGGQLEDSKVLKGVMFNKDVVAPGKMKRKIVNPRIILLDCPVEYKKGENQTNAELVREEDWEVLLKMEEEYIENMCAQILKLKPDLVITEKGLSDLA

CHYLSKAGVSAIRRLRKTDNNRIAKACGATIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARN

ILKNPKLLPGGGATELTVSAALKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGEITDMKERKIWDAYN

VKAQTFKTAIESACMLLRIDDIVSGIKKKQAPGAQGPSKPKIETEADADSEQILPD

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T046300 [exp]	0	1

Potri.T046300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T046300 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T046300 coexpression network