Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 455 / 5e-159 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 293 / 5e-95 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 289 / 7e-95 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 270 / 2e-87 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT5G20030 47 / 2e-05 Plant Tudor-like RNA-binding protein (.1) AT5G47690 45 / 0.0001 binding (.1.2.3) AT1G80810 44 / 0.0002 Tudor/PWWP/MBT superfamily protein (.1.2) AT4G31880 44 / 0.0002 unknown protein AT3G57970 42 / 0.0004 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT4G02070 43 / 0.0005 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212300 [exp] 845 / 0 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 747 / 0 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 442 / 3e-153 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 434 / 7e-150 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 360 / 3e-122 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 360 / 4e-122 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 52 / 4e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.003G181300 [exp] 50 / 4e-06 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.002G046800 [exp] 49 / 5e-06 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031223 [exp] 464 / 1e-161 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 438 / 4e-152 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 424 / 2e-146 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 420 / 7e-145 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 298 / 2e-97 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 265 / 3e-85 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 145 / 7e-42 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10003091 [exp] 49 / 6e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10014715 [exp] 49 / 7e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10018749 [exp] 47 / 2e-05 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [poplar] [flax] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Potri.T070080.1 pacid=42812786 polypeptide=Potri.T070080.1.p locus=Potri.T070080 ID=Potri.T070080.1.v4.1 annot-version=v4.1 ATGGATTATCAGCTTTCTGATAGTAGTGGAACTGATGATGACCTTCCACCAACACATCGAAATAGATTCCAAAGTGGGGTGCGAACTGCTGGAAATGGAA GATCTGCAGTTGGTGGTGGTGCTTCACAGCCAAGTTTGCATAGTGACATGGAAACTCAAATCCACAATATTGAACAAGAAGCATATACTTCAGTCTTGCG AGCCTTTAAAGCCCAGTCAGATGCCATTACTTGGGAAAAGGAAAGCCTAATTACAGAACTCAGAAAAGAACTAAGAGTTTCAGATGAGGAGCACAGGGAG CTCCTAGCTAGGGTTAATGCTGATGATATTATCCGGAGGATAAGGGAATGGAGAAAGGCAAATGGGATCCAACCTAGCATGCCAAGCACCACCCAGCCTT CTCACAACCCTATAGCTAGTCCTTCTGCTTCAGGATCACGCAAGAAACAGAAAACATCGCAGTCAGTCGCCTCATTGTCCATGGGTGCACCTTCTCCTGT ATTGCATCCATCTATGCAACAATCTACATCAGCCCTGAGACATGGCCCTCCTCCTGGATCTGGGAACAAGAAGCCCAAATCATCCATGCAGCAATGTTCT ACAGGTTTGTCTGGCAGGGCACAAGTTGCTAACCATGGCTCTTCAGGTGCCTTTGCAGCCAATGATTTAATTGGAAAGAAAGTTTGGACTCTATGGCCAG AGGATAACCACTACTATGAAGCTGTTATAACTGACTACAATGCAGTTGAGGGGAGGCATGCTTTGGTTTATGATATTAATACAGGGGATGAAACGTGGGA ATGGGTCAATCTCAAAGAGATATCTCCTGAAGATATTAGGTGGGAGGATGAGGAAACTGGACTTTTCCGTAGAGGTGGCCGGCCTGGACCAGGCCGTGGG AATAAGAAATCAATTGCACGTGGTGGCACTGTTGCTGCTGCAGGAAGAGGTAGAGGAACCATAAAGGGTCAATCCAAAAAAGATTTCTCTTTAACCAAGA ATGGCGTTGCGAAGAAAGCTATGGGTGATATTGAGATACTTCACACAGATACTCTAATAAAGGAGGTAGAAAAAGTTTTTGGTGCTAGCCATCCTGATCC TTTGGAAATTGAGAAAGCAAAGAAAGTTCTAAGAGAACAAGAACAAGCCCTGGTTAAAGCAATTGCGAGGCTTGAAGATGCATTGGATGGTCAAAGCGAT GAGGGAGAACATCCGCTTCCCCATATTCAATCAAGGGACCAGAATCGGGGATGGAGAAAACGGCCGTATGATGAGATTGTTGGTGAAGGTAGAGGAATCA AAGGCTCAGGTGGCAACAAAATGGCAAGAAATGGTAGAATTGTTCCTAGTGATCATCATGATGAGAATTATGACATGTGA
AA sequence Show only first row Show all	>Potri.T070080.1 pacid=42812786 polypeptide=Potri.T070080.1.p locus=Potri.T070080 ID=Potri.T070080.1.v4.1 annot-version=v4.1 MDYQLSDSSGTDDDLPPTHRNRFQSGVRTAGNGRSAVGGGASQPSLHSDMETQIHNIEQEAYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE LLARVNADDIIRRIREWRKANGIQPSMPSTTQPSHNPIASPSASGSRKKQKTSQSVASLSMGAPSPVLHPSMQQSTSALRHGPPPGSGNKKPKSSMQQCS TGLSGRAQVANHGSSGAFAANDLIGKKVWTLWPEDNHYYEAVITDYNAVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEDEETGLFRRGGRPGPGRG NKKSIARGGTVAAAGRGRGTIKGQSKKDFSLTKNGVAKKAMGDIEILHTDTLIKEVEKVFGASHPDPLEIEKAKKVLREQEQALVKAIARLEDALDGQSD EGEHPLPHIQSRDQNRGWRKRPYDEIVGEGRGIKGSGGNKMARNGRIVPSDHHDENYDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T070080 [exp]	0	1

Compare expression of checked genes

Potri.T070080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.