Plant FIBer expression Database

Potri.T084200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 574 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 354 / 4e-111 lectin protein kinase family protein (.1)
AT5G24080 287 / 1e-89 Protein kinase superfamily protein (.1)
AT4G00340 292 / 7e-88 RLK4 receptor-like protein kinase 4 (.1)
AT4G32300 289 / 1e-86 SD2-5 S-domain-2 5 (.1)
AT2G19130 275 / 3e-81 S-locus lectin protein kinase family protein (.1)
AT5G35370 274 / 8e-81 S-locus lectin protein kinase family protein (.1)
AT4G21390 253 / 5e-73 B120 S-locus lectin protein kinase family protein (.1)
AT1G61440 245 / 1e-70 S-locus lectin protein kinase family protein (.1)
AT3G25560 241 / 1e-70 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G211932
[exp]
1018 / 0 AT5G60900 510 / 7e-175 receptor-like protein kinase 1 (.1)
Potri.T084300
[exp]
1006 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084401
[exp]
1004 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G212000
[exp]
801 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084500
[exp]
797 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014600
[exp]
754 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014100
[exp]
749 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084351
[exp]
687 / 0 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1)
Potri.001G153800
[exp]
663 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031230
[exp]
688 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10024195
[exp]
584 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
583 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
573 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
569 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
567 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
416 / 7e-135 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
416 / 1e-134 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
389 / 6e-129 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10006052
[exp]
336 / 6e-104 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
CL0168 PAN PF08276 PAN_2 PAN-like domain
Representative CDS sequence
>Potri.T084200.2 pacid=42812783 polypeptide=Potri.T084200.2.p locus=Potri.T084200 ID=Potri.T084200.2.v4.1 annot-version=v4.1
ATGAATGACACTGGCAACTTCGTGCTTCAAAACAGAAATTCTGAAAGGTTGTGGGAGAGTTTCAACAATCCCACTGATACATTGTTGCCTACTCAGATTA
TGGAGGCTGGAGGGGTGGTTTCTTCTCGAAGGACGGAGACCAACTTTTCGCTGGGGAGATTCCAGCTCCGTTTGCTTGATAATGGAAATCTTGTGCTGAA
TTCTATGAATTTGCCAACCAAATTTGCTTACGACGACTACTATGGAAGTGGAACTTCTGATGCTTCAAATTCATCAAATTCTGGTTATCGATTGCTCTTC
AATGAGTCAGGCTACATGTACATATTGAGAAGAAATGGGCTGAGAGAGGATCTCACAAAAACAGCACTTCCTACTACAGACTTCTACCGTAGGGCAACTC
TCAATTTTGATGGTGTTTTCACTCAATATTCATACCCGAAAACATCCTCTTCTATTAGAAGCTGGTCACCTGTCAGGTCTGAACCAGAAAATATATGCAA
GTTTAATTCAATTTGGGGTAGTGGAGCGTGTGGATACAACAGCATCTGCAGCCTTAGTGTTGATCGAAGGCCCAATTGTACTTGTCCACAAGAATTTTCT
TTGCTTGATCAGAATGACAAGCATGGAGGCTGCATACCAAATTTCGAAATAAGCTGCAAAGATAATGGAAAAAATTCCTCAGAAGATCTGTATGATTTTG
TTGAGCTAAGATATGTTGATTATCCATCAGGTGATGCAGAACATTTACAACCTCAAAATGAAGAACAGTGCAGAAAAGCTTGCTTGAATGACTGTCTCTG
TGGGGCTGTCATCTTTTTAGGCAACAACTGCTGGAAGAAGAAGTTACCACTTTCGAATGGAAAAGTTGACAGTGGTTTTAACGGGAAGACTTTCATCAAA
TTTAAGAAAGGTCATATCCCTCCCGGGAATCCTGTTCTTCAGATTCCTGAAACGAAGACGGAAAGGGACGACATTAAGGTCATCACAGGAATAGTGCTCT
TGGTTAGCTCTGTATTTGTCAACTTTATATTGATCAGTACATTATGTTTCTGTTCTTCCTTCATTTACCGCAACAAAGTAGCAAATGTTCGAGAAGAAAA
CAATGTGGAGTCAAACTTGCGTTCATTTACATACAAAGAGCTCACAGAAGCTACAGAAGGCTTCAAGGATGAACTGGGGAGAGGAGCTTTTGGTGGTGTT
TACAAGGGTGCGATAAAAACAGGTTTTACTAATTTTATTGCTGTGAAGAAGTTAGATGGCGTGGTTGAACATGGCGAGAAGGAATTCAAAACCGAAGTGA
CTGTGATCGGTCAGACGCATCACAAGAATTTGGTCCGATTGTTAGGATTTTGTGACGAGGGGCAGCATCGTTTGTTGGTGTATGAGTTCTTGAGTAATGG
CACTCTAGCCGATTTTCTTTTTGGAAGCTTAAGGCCTAGTTGGAAGCAAAGAACTCAGATTGCCTTCGGCATTGCAAGAGGACTCTTGTACCTACACGAA
GAATGTAGCACCCAAATCATTCACTGTGACATAAAGCCGCAGAACATTCTTATTGATGACTACTACAATGCTCGGATATCAGATTTTGGATTGGCAAAAC
TTTTGGCGATTAATCAGAGCCAAACCAAAACTGCCATTCGAGGAACAAAAGGATATGTTGCTCCTGAATGGTTTAGGAACACACCAGTCACTGTGAAGGT
TGATGTCTATAGCTTTGGTGTCTTGCTGCTAGAGATCATCTGTTGTCGGAGAAGTGTAGATCTGGAGATCAGTGGAACTGGAGCTATATTGATCGACTGG
GCTTATGACTGCTATAGGCACGGAACGCTTGACGCTTTGATTGAAGATGACATGGAGGCCATGAATGACGTATCAACACTAGAGAGGGCTATGAAGGTTG
CAATTTGGTGCATTCAAGAGGTGCCATCTCTTAGACCCACCATGAGGAAGGTGACACAGATGCTTGAAGGAGTTGTTGAAGTGCCTGCTCCACCGAATCC
GTTCCCGTTCAGTGAAATTAGCTGCTCCTGA
AA sequence
>Potri.T084200.2 pacid=42812783 polypeptide=Potri.T084200.2.p locus=Potri.T084200 ID=Potri.T084200.2.v4.1 annot-version=v4.1
MNDTGNFVLQNRNSERLWESFNNPTDTLLPTQIMEAGGVVSSRRTETNFSLGRFQLRLLDNGNLVLNSMNLPTKFAYDDYYGSGTSDASNSSNSGYRLLF
NESGYMYILRRNGLREDLTKTALPTTDFYRRATLNFDGVFTQYSYPKTSSSIRSWSPVRSEPENICKFNSIWGSGACGYNSICSLSVDRRPNCTCPQEFS
LLDQNDKHGGCIPNFEISCKDNGKNSSEDLYDFVELRYVDYPSGDAEHLQPQNEEQCRKACLNDCLCGAVIFLGNNCWKKKLPLSNGKVDSGFNGKTFIK
FKKGHIPPGNPVLQIPETKTERDDIKVITGIVLLVSSVFVNFILISTLCFCSSFIYRNKVANVREENNVESNLRSFTYKELTEATEGFKDELGRGAFGGV
YKGAIKTGFTNFIAVKKLDGVVEHGEKEFKTEVTVIGQTHHKNLVRLLGFCDEGQHRLLVYEFLSNGTLADFLFGSLRPSWKQRTQIAFGIARGLLYLHE
ECSTQIIHCDIKPQNILIDDYYNARISDFGLAKLLAINQSQTKTAIRGTKGYVAPEWFRNTPVTVKVDVYSFGVLLLEIICCRRSVDLEISGTGAILIDW
AYDCYRHGTLDALIEDDMEAMNDVSTLERAMKVAIWCIQEVPSLRPTMRKVTQMLEGVVEVPAPPNPFPFSEISCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T084200
[exp]
0 1

Potri.T084200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.