Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G60900	645 / 0	RLK1	receptor-like protein kinase 1 (.1)
AT1G34300	350 / 4e-108		lectin protein kinase family protein (.1)
AT4G00340	309 / 8e-93	RLK4	receptor-like protein kinase 4 (.1)
AT5G24080	283 / 1e-86		Protein kinase superfamily protein (.1)
AT2G19130	288 / 3e-85		S-locus lectin protein kinase family protein (.1)
AT4G32300	278 / 1e-81	SD2-5	S-domain-2 5 (.1)
AT5G35370	278 / 5e-81		S-locus lectin protein kinase family protein (.1)
AT1G11280	276 / 8e-81		S-locus lectin protein kinase family protein (.1.2.3.4)
AT1G61420	262 / 1e-75		S-locus lectin protein kinase family protein (.1)
AT1G61610	258 / 6e-74		S-locus lectin protein kinase family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T084401 [exp]	1556 / 0	AT5G60900	641 / 0.0	receptor-like protein kinase 1 (.1)
Potri.T084200 [exp]	1008 / 0	AT5G60900	573 / 0.0	receptor-like protein kinase 1 (.1)
Potri.003G212000 [exp]	955 / 0	AT5G60900	655 / 0.0	receptor-like protein kinase 1 (.1)
Potri.T084500 [exp]	949 / 0	AT5G60900	653 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G014600 [exp]	891 / 0	AT5G60900	666 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G014100 [exp]	890 / 0	AT5G60900	669 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G228200 [exp]	798 / 0	AT5G60900	601 / 0.0	receptor-like protein kinase 1 (.1)
Potri.003G211932 [exp]	769 / 0	AT5G60900	510 / 7e-175	receptor-like protein kinase 1 (.1)
Potri.001G153800 [exp]	765 / 0	AT5G60900	545 / 0.0	receptor-like protein kinase 1 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10031230 [exp]	803 / 0	AT5G60900	388 / 4e-123	receptor-like protein kinase 1 (.1)
Lus10004365 [exp]	679 / 0	AT5G60900	545 / 0.0	receptor-like protein kinase 1 (.1)
Lus10024195 [exp]	674 / 0	AT5G60900	367 / 3e-114	receptor-like protein kinase 1 (.1)
Lus10010992 [exp]	650 / 0	AT5G60900	540 / 0.0	receptor-like protein kinase 1 (.1)
Lus10031805 [exp]	645 / 0	AT5G60900	530 / 5e-178	receptor-like protein kinase 1 (.1)
Lus10031231 [exp]	638 / 0	AT5G60900	536 / 2e-180	receptor-like protein kinase 1 (.1)
Lus10042940 [exp]	454 / 1e-147	AT5G60900	381 / 1e-120	receptor-like protein kinase 1 (.1)
Lus10036639 [exp]	452 / 5e-147	AT5G60900	394 / 1e-125	receptor-like protein kinase 1 (.1)
Lus10030400 [exp]	392 / 2e-128	AT5G60900	356 / 1e-115	receptor-like protein kinase 1 (.1)
Lus10039315 [exp]	365 / 4e-113	AT5G24080	667 / 0.0	Protein kinase superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0016 [poplar] [flax]	PKinase	PF00069 [poplar] [flax]	Pkinase	Protein kinase domain
CL0016 [poplar] [flax]		PF00954 [poplar] [flax]	S_locus_glycop	S-locus glycoprotein domain
CL0016 [poplar] [flax]		PF01453 [poplar] [flax]	B_lectin	D-mannose binding lectin
CL0168 [poplar] [flax]	PAN	PF08276 [poplar] [flax]	PAN_2	PAN-like domain

Representative CDS sequence

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>Potri.T084300.4 pacid=42812802 polypeptide=Potri.T084300.4.p locus=Potri.T084300 ID=Potri.T084300.4.v4.1 annot-version=v4.1

ATGGCTACTGCTATTTTTACTTTGATGTTCCTAGTAACGATGGTACTGTTACAGCTTATGGCTGTTGCTCAAACTAATGGAAGTATGCCCGTGGGTGCAT

TTATCACTGCAACTGATGATGCTCCTTCATGGCTTTCTTCCTCTGGAGAATTTGCTTTTGGATTTCAGCCCTTGGAATACAAGGATCATTTCTTGCTGTC

TATTTGGTATGCCAAGATTCCTGAGAAGACCATAGTTTGGTATGCAAATGGAGATAATCCTGCACCAAGGGAGTCTAAGGTCGAGCTGAGGGGTGATAGT

GGGCTGGTGCTTACTGATCCTCAAGGCAACCTAATATGGTCATCTGGTAGCCTTCTTGGTACAGTTTCGTCAGGTGTAATGAATGACACTGGCAACTTCG

TGCTTCAAAATAGCAATTCTTTCAGGTTGTGGGAGAGTTTCAGCAATCCCACTGATACATTGTTGCCTACTCAGATTATGGAGGTTGGAGGGGTGGTTTC

TTCTCGAAGGACGGAGACCAACTTTTCGCTGGGGAGATTCCAGCTCCGTTTGCTTGATAATGGAAATCTTGTGCTGAATTACATGAATTTGCCAACCAAA

TTTGTTTACGATGACTACTATAGTAGTGAAACTTCTGATGCTTCAAATTCATCAAATTCTGGTTATCGATTGATCTTCAATGAGTCAGGCTACATGTACA

TATTGAGAAGAAATGGGCTGATAGAGGATCTCACAAAAACAGCACTTCCTACTATAGACTTCTATCATAGGGCAACACTCAATTTTGATGGTGTTTTCAC

TCAATATTTTTACCCAAAAGCATCTAGCGGTAACAGAAGCTGGTCCTCAGTCTGGTCCAAACCAGATGATATATGTGTCAATATGGGAGCGGACTTGGGT

AGTGGAGCATGTGGATATAACAGCATCTGCAATCTAAAAGCTGATAAAAGGCCAGAATGTAAATGTCCACAAGGTTTTTCTTTGCTTGATCAGAATGACA

AGTATGGAAGCTGCATACCAGATTTCGAACTAAGCTGCAGAGATGATGGACTCAATTCCACCGAAGATCAGTATGATTTTGTGGAGCTAATAAATGTTGA

TTGGCCAACATCTGATTATGAGAGGTACAAACCTATTAACGAAGATGAGTGCCGAAAGTCTTGCTTGAATGATTGTCTATGTTCTGTTGCCATTTTTAGA

GATGGCTGCTGGAAGAAGAAGTTACCACTCTCGAATGGAAGATTTGACATTGGTATGAATGGGAAGGCTTTCCTCAAATTTCCGAAAGGTTATGTTCCTC

TGGACAGGCCTCCTCCTCAGCTTCCTGGAGAGAAAAAGAAACCAGACATTAAGTTCATCACTGGATCAGTAGTCCTTGGTACCTCTGTATTTGTCAACTT

TGTATTGGTCGGTGCTTTCTGTCTCACTTCTTCCTTCATTTATCGCAAGAAAACTGAAAAAGTTAAGGAAGGTGGAAGTGGTTTGGAGACAAACTTGCGG

TATTTTACATACAAAGAGCTCGCTGAAGCGACAAATGACTTCAAAGATGAGGTGGGAAGAGGAGGTTTTGGTGTTGTTTACAAGGGGACAATACAGGCAG

GCTCTACTAGGGTTGTTGCTGTCAAGAAGTTAGATAAAGTGGTTCAGGATGGGGAAAAAGAATTTAAAACAGAAGTACAAGTGATTGGCCAGACGCATCA

CAAGAATTTGGTCCGGTTGCTAGGATTTTGTGACGAGGGGCAGAATCGATTGTTGGTGTACGAGTTCTTGAGTAATGGCACTCTAGCAAACTTCCTTTTC

GGATGCTCTAAGCCTAATTGGAAGCAAAGGACCCAAATTGCCTTTGGCATTGCAAGAGGACTCTTGTACCTGCATGAAGAATGCGGCACCCAAATCATTC

ATTGTGATATAAAGCCTCAGAACATACTTCTTGACAATTATTACAATGCTCGAATATCTGATTTTGGACTGGCAAAGCTTTTGGTGATGGATCAGAGCAA

AACTCAAACTGCTATTAGAGGAACAAAAGGATATGTTGCACCTGAATGGTTTAGGAACAGACCAATCACTGTGAAGGTTGATGTGTATAGCTTCGGTGTC

ATGCTGCTAGAGATCATCTGTTGTAGAAGAAATGTAGATTTGGAGATCGGTGAAGTAGAGAATCCAGTACTGACTGATTGGGCTTATGACTGCTATATGG

ATGGAAGTTTGGATGTTTTAATTGGAGATGACACGGAGGCCAAGAATGACATATCGACACTAGAGCGTCTGTTGAAGGTCGGGATTTGGTGTATTCAAGA

GGATCCATCTCTCAGACCCACCATGAGGAAGGTCACACAGATGCTTGAAGGAGTTGTTGAAGTTCCTGCTGCTCCAAATCCATTTCCATATAGTTCAATT

AGCAAATACAGTCACTAA

AA sequence

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>Potri.T084300.4 pacid=42812802 polypeptide=Potri.T084300.4.p locus=Potri.T084300 ID=Potri.T084300.4.v4.1 annot-version=v4.1

MATAIFTLMFLVTMVLLQLMAVAQTNGSMPVGAFITATDDAPSWLSSSGEFAFGFQPLEYKDHFLLSIWYAKIPEKTIVWYANGDNPAPRESKVELRGDS

GLVLTDPQGNLIWSSGSLLGTVSSGVMNDTGNFVLQNSNSFRLWESFSNPTDTLLPTQIMEVGGVVSSRRTETNFSLGRFQLRLLDNGNLVLNYMNLPTK

FVYDDYYSSETSDASNSSNSGYRLIFNESGYMYILRRNGLIEDLTKTALPTIDFYHRATLNFDGVFTQYFYPKASSGNRSWSSVWSKPDDICVNMGADLG

SGACGYNSICNLKADKRPECKCPQGFSLLDQNDKYGSCIPDFELSCRDDGLNSTEDQYDFVELINVDWPTSDYERYKPINEDECRKSCLNDCLCSVAIFR

DGCWKKKLPLSNGRFDIGMNGKAFLKFPKGYVPLDRPPPQLPGEKKKPDIKFITGSVVLGTSVFVNFVLVGAFCLTSSFIYRKKTEKVKEGGSGLETNLR

YFTYKELAEATNDFKDEVGRGGFGVVYKGTIQAGSTRVVAVKKLDKVVQDGEKEFKTEVQVIGQTHHKNLVRLLGFCDEGQNRLLVYEFLSNGTLANFLF

GCSKPNWKQRTQIAFGIARGLLYLHEECGTQIIHCDIKPQNILLDNYYNARISDFGLAKLLVMDQSKTQTAIRGTKGYVAPEWFRNRPITVKVDVYSFGV

MLLEIICCRRNVDLEIGEVENPVLTDWAYDCYMDGSLDVLIGDDTEAKNDISTLERLLKVGIWCIQEDPSLRPTMRKVTQMLEGVVEVPAAPNPFPYSSI

SKYSH

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T084300 [exp]	0	1

Potri.T084300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T084300 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T084300 coexpression network