Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 419 / 6e-141 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 298 / 2e-93 lectin protein kinase family protein (.1) AT5G24080 288 / 2e-93 Protein kinase superfamily protein (.1) AT4G32300 288 / 1e-89 SD2-5 S-domain-2 5 (.1) AT2G19130 273 / 4e-84 S-locus lectin protein kinase family protein (.1) AT4G00340 261 / 2e-79 RLK4 receptor-like protein kinase 4 (.1) AT3G25560 241 / 2e-73 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G35370 244 / 5e-73 S-locus lectin protein kinase family protein (.1) AT1G60800 239 / 1e-72 NIK3 NSP-interacting kinase 3 (.1) AT2G23950 238 / 2e-72 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084200 [exp] 686 / 0 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211932 [exp] 681 / 0 AT5G60900 510 / 7e-175 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 533 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 532 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 466 / 2e-158 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 464 / 1e-157 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 456 / 9e-155 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 452 / 3e-153 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 448 / 1e-151 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 419 / 7e-140 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 387 / 7e-132 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 383 / 5e-126 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 375 / 6e-123 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 362 / 4e-118 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 354 / 4e-115 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 353 / 1e-114 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 320 / 6e-102 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 319 / 2e-101 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 302 / 1e-100 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.T084351.1 pacid=42812789 polypeptide=Potri.T084351.1.p locus=Potri.T084351 ID=Potri.T084351.1.v4.1 annot-version=v4.1 ATGGCCTTTCCTATTCTTCATCTTTCGTTTTCCTTGCTCATTATGCTACCTCCTTTTGCTGTTTCTCAAACTGGTGGTAATATAACTGTGGGTGCTTCCC TTTCCACTTCTGAAAACACCTCATGGCTCTCACCTTCTGGTGACTTTGCCTTTGGTTTTCATCCACTGTATGGCAACAAATATCTCTTCTTGCTTGCCAT ATGTACATTATGTTTCTGTTCTTCCTTCATTTACCGCAACAAAGTAGCAAATGTTCGAGAAGAAAACAATGTGGAGTCAAACTTGCGTTCATTTACATAC AAAGAGCTCACAGAAGCTACAGAAGGCTTCAAGGATGACCTGGGGAGAGGAGCTTTTGGTGGTGTTTACAAGGGTGCGATAAAAACAGGTTTTACTAATT TTATTGCTGTGAAGAAGTTAGATGGCGTGGTTGAACATGGCGAGAAGGAATTCAAAACCGAAGTGACTGTGATCGGTCAGACGCATCACAAGAATTTGGT CCGATTGTTAGGATTTTGTGACGAGGGGCAGCATCGTTTGTTGGTGTATGAGTTCTTGAGTAATGGCACTCTAGCCGATTTTCTTTTTGGAAGCTTAAGG CCTAGTTGGAAGCAAAGAACTCAGATTGCCTTCGGCATTGCAAGAGGACTCTTGTACCTACACGAAGAATGTAGCACCCAAATCATTCACTGTGACATAA AGCCGCAGAACATTCTTATTGATGACTACTACAATGCTCGGATATCAGATTTTGGATTGGCAAAACTTTTGGCGATTAATCAGAGCCAAACCAAAACTGC CATTCGAGGAACAAAAGGATATGTTGCTCCTGAATGGTTTAGGAACACACCAGTCACTGTGAAGGTTGATGTCTATAGCTTTGGTGTCTTGCTGCTAGAG ATCATCTGTTGTCGGAGAAGTGTAGATCTGGAGATCAGTGGAACTGGAGCTATATTGATCGACTGGGCTTATGACTGCTATAGGCACGGAACGCTTGACG CTTTGATTGAAGATGACATGGAGGCCATGAATGACGTATCAACACTAGAGAGGGCTATGAAGGTTGCAATTTGGTGCATTCAAGAGGTGCCATCTCTTAG ACCCACCATGAGGAAGGTGACACAGATGCTTGAAGGAGTTGTTGAAGTGCCTGCTCCACCGAATCCGTTCCCGTTCAGTGAAATTAGCTGCTCCTGA
AA sequence Show only first row Show all	>Potri.T084351.1 pacid=42812789 polypeptide=Potri.T084351.1.p locus=Potri.T084351 ID=Potri.T084351.1.v4.1 annot-version=v4.1 MAFPILHLSFSLLIMLPPFAVSQTGGNITVGASLSTSENTSWLSPSGDFAFGFHPLYGNKYLFLLAICTLCFCSSFIYRNKVANVREENNVESNLRSFTY KELTEATEGFKDDLGRGAFGGVYKGAIKTGFTNFIAVKKLDGVVEHGEKEFKTEVTVIGQTHHKNLVRLLGFCDEGQHRLLVYEFLSNGTLADFLFGSLR PSWKQRTQIAFGIARGLLYLHEECSTQIIHCDIKPQNILIDDYYNARISDFGLAKLLAINQSQTKTAIRGTKGYVAPEWFRNTPVTVKVDVYSFGVLLLE IICCRRSVDLEISGTGAILIDWAYDCYRHGTLDALIEDDMEAMNDVSTLERAMKVAIWCIQEVPSLRPTMRKVTQMLEGVVEVPAPPNPFPFSEISCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T084351 [exp]	0	1

Compare expression of checked genes

Potri.T084351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.