Plant FIBer expression Database

Potri.T084401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 642 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 350 / 3e-108 lectin protein kinase family protein (.1)
AT4G00340 308 / 1e-92 RLK4 receptor-like protein kinase 4 (.1)
AT5G24080 282 / 1e-86 Protein kinase superfamily protein (.1)
AT2G19130 288 / 3e-85 S-locus lectin protein kinase family protein (.1)
AT4G32300 278 / 1e-81 SD2-5 S-domain-2 5 (.1)
AT5G35370 278 / 5e-81 S-locus lectin protein kinase family protein (.1)
AT1G11280 276 / 5e-81 S-locus lectin protein kinase family protein (.1.2.3.4)
AT1G61420 262 / 1e-75 S-locus lectin protein kinase family protein (.1)
AT1G61610 258 / 6e-74 S-locus lectin protein kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T084300
[exp]
1556 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084200
[exp]
1006 / 0 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G212000
[exp]
951 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084500
[exp]
946 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014600
[exp]
889 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G014100
[exp]
887 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1)
Potri.001G228200
[exp]
797 / 0 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211932
[exp]
769 / 0 AT5G60900 510 / 7e-175 receptor-like protein kinase 1 (.1)
Potri.001G153800
[exp]
763 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031230
[exp]
802 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
679 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10024195
[exp]
672 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
649 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
644 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
638 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
454 / 7e-148 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
452 / 4e-147 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
392 / 2e-128 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10039315
[exp]
362 / 2e-112 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF00954 S_locus_glycop S-locus glycoprotein domain
CL0016 PF01453 B_lectin D-mannose binding lectin
CL0168 PAN PF08276 PAN_2 PAN-like domain
Representative CDS sequence
>Potri.T084401.1 pacid=42812804 polypeptide=Potri.T084401.1.p locus=Potri.T084401 ID=Potri.T084401.1.v4.1 annot-version=v4.1
ATGGTACTGTTACAGCTTATGGCTGTTGCTCAAACTAATGGAAGTATGCCCGTGGGTGCATTTATCACTGCAACTGATGATGCTCCTTCATGGCTTTCTT
CCTCTGGAGAATTTGCTTTTGGATTTCAGCCCTTGGAATACAAGGATCATTTCTTGCTGTCTATTTGGTATGCCAAGATTCCTGAGAAGACCATAGTTTG
GTATGCAAATGGAGATAATCCTGCACCAAGGGAGTCTAAGGTCGAGCTGAGGGGTGATAGTGGGCTGGTGCTTACTGATCCTCAAGGCAACCTAATATGG
TCATCTGGTAGCCTTCTTGGTACAGTTTCGTCAGGTGTAATGAATGACACTGGCAACTTCGTGCTTCAAAATAGCAATTCTTTCAGGTTGTGGGAGAGTT
TCAGCAATCCCACTGATACATTGTTGCCTACTCAGATTATGGAGGTTGGAGGGGTGGTTTCTTCTCGAAGGACGGAGACCAACTTTTCGCTGGGGAGATT
CCAGCTCCGTTTGCTTGATAATGGAAATCTTGTGCTGAATTACATGAATTTGCCAACCAAATTTGTTTACGATGACTACTATAGTAGTGAAACTTCTGAT
GCTTCAAATTCATCAAATTCTGGTTATCGATTGATCTTCAATGAGTCAGGCTACATGTACATATTGAGAAGAAATGGGCTGATAGAGGATCTCACAAAAA
CAGCACTTCCTACTATAGACTTCTATCATAGGGCAACACTCAATTTTGATGGTGTTTTCACTCAATATTTTTACCCAAAAGCATCTAGCGGTAACAGAAG
CTGGTCCTCAGTCTGGTCCAAACCAGATGATATATGTGTCAATATGGGAGCGGACTTGGGTAGTGGAGCATGTGGATATAACAGCATCTGCAATCTAAAA
GCTGATAAAAGGCCAGAATGTAAATGTCCACAAGGTTTTTCTTTGCTTGATCAGAATGACAAGTATGGAAGCTGCATACCAGATTTCGAACTAAGCTGCA
GAGATGATGGACTCAATTCCACCGAAGATCAGTATGATTTTGTGGAGCTAATAAATGTTGATTGGCCAACATCTGATTATGAGAGGTACAAACCTATTAA
CGAAGATGAGTGCCGAAAGTCTTGCTTGAATGATTGTCTATGTTCTGTTGCCATTTTTAGAGATGGCTGCTGGAAGAAGAAGTTACCACTCTCGAATGGA
AGATTTGACATTGGTATGAATGGGAAGGCTTTCCTCAAATTTCCGAAAGGTTATGTTCCTCTGGACAGGCCTCCTCCTCAGCTTCCTGGAGAGAAAAAGA
AACCAGACATTAAGTTCATCACTGGATCAGTAGTCCTTGGTACCTCTGTATTTGTCAACTTTGTATTGGTCGGTGCTTTCTGTCTCACTTCTTCCTTCAT
TTATCGCAAGAAAACTGAAAAAGTTAAGGAAGGTGGAAGTGGTTTGGAGACAAACTTGCGGTATTTTACATACAAAGAGCTCGCTGAAGCGACAAATGAC
TTCAAAGATGAGGTGGGAAGAGGAGGTTTTGGTGTTGTTTACAAGGGGACAATACAGGCAGGCTCTACTAGGGTTGTTGCTGTCAAGAAGTTAGATAAAG
TGGTTCAGGATGGGGAAAAAGAATTTAAAACAGAAGTACAAGTGATTGGCCAGACGCATCACAAGAATTTGGTCCGGTTGCTAGGATTTTGTGACGAGGG
GCAGAATCGATTGTTGGTGTACGAGTTCTTGAGTAATGGCACTCTAGCAAACTTCCTTTTCGGATGCTCTAAGCCTAATTGGAAGCAAAGGACCCAAATT
GCCTTTGGCATTGCAAGAGGACTCTTGTACCTGCATGAAGAATGCGGCACCCAAATCATTCATTGTGATATAAAGCCTCAGAACATACTTCTTGACAATT
ATTACAATGCTCGAATATCTGATTTTGGACTGGCAAAGCTTTTGGTGATGGATCAGAGCAAAACTCAAACTGCTATTAGAGGAACAAAAGGATATGTTGC
ACCTGAATGGTTTAGGAACAGACCAATCACTGTGAAGGTTGATGTGTATAGCTTCGGTGTCATGCTGCTAGAGATCATCTGTTGTAGAAGAAATGTAGAT
TTGGAGATCGGTGAAGTAGAGAATCCAGTACTGACTGATTGGGCTTATGACTGCTATATGGATGGAAGTTTGGATGTTTTAATTGGAGATGACACGGAGG
CCAAGAATGACATATCGACACTAGAGCGTCTGTTGAAGGTCGGGATTTGGTGTATTCAAGAGGATCCATCTCTCAGACCCACCATGAGGAAGGTCACACA
GATGCTTGAAGGAGTTGTTGAAGTTCCTGCTGCTCCAAATCCATTTCCATATAGTTCAATTAGCAAATACAGTCACTAA
AA sequence
>Potri.T084401.1 pacid=42812804 polypeptide=Potri.T084401.1.p locus=Potri.T084401 ID=Potri.T084401.1.v4.1 annot-version=v4.1
MVLLQLMAVAQTNGSMPVGAFITATDDAPSWLSSSGEFAFGFQPLEYKDHFLLSIWYAKIPEKTIVWYANGDNPAPRESKVELRGDSGLVLTDPQGNLIW
SSGSLLGTVSSGVMNDTGNFVLQNSNSFRLWESFSNPTDTLLPTQIMEVGGVVSSRRTETNFSLGRFQLRLLDNGNLVLNYMNLPTKFVYDDYYSSETSD
ASNSSNSGYRLIFNESGYMYILRRNGLIEDLTKTALPTIDFYHRATLNFDGVFTQYFYPKASSGNRSWSSVWSKPDDICVNMGADLGSGACGYNSICNLK
ADKRPECKCPQGFSLLDQNDKYGSCIPDFELSCRDDGLNSTEDQYDFVELINVDWPTSDYERYKPINEDECRKSCLNDCLCSVAIFRDGCWKKKLPLSNG
RFDIGMNGKAFLKFPKGYVPLDRPPPQLPGEKKKPDIKFITGSVVLGTSVFVNFVLVGAFCLTSSFIYRKKTEKVKEGGSGLETNLRYFTYKELAEATND
FKDEVGRGGFGVVYKGTIQAGSTRVVAVKKLDKVVQDGEKEFKTEVQVIGQTHHKNLVRLLGFCDEGQNRLLVYEFLSNGTLANFLFGCSKPNWKQRTQI
AFGIARGLLYLHEECGTQIIHCDIKPQNILLDNYYNARISDFGLAKLLVMDQSKTQTAIRGTKGYVAPEWFRNRPITVKVDVYSFGVMLLEIICCRRNVD
LEIGEVENPVLTDWAYDCYMDGSLDVLIGDDTEAKNDISTLERLLKVGIWCIQEDPSLRPTMRKVTQMLEGVVEVPAAPNPFPYSSISKYSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T084401
[exp]
0 1

Potri.T084401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.