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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G60900	653 / 0	RLK1	receptor-like protein kinase 1 (.1)
AT1G34300	339 / 5e-104		lectin protein kinase family protein (.1)
AT4G00340	313 / 2e-94	RLK4	receptor-like protein kinase 4 (.1)
AT2G19130	311 / 9e-94		S-locus lectin protein kinase family protein (.1)
AT5G35370	305 / 7e-91		S-locus lectin protein kinase family protein (.1)
AT5G24080	283 / 1e-86		Protein kinase superfamily protein (.1)
AT4G21390	286 / 3e-84	B120	S-locus lectin protein kinase family protein (.1)
AT4G21380	279 / 1e-81	ARK3	receptor kinase 3 (.1)
AT4G32300	278 / 1e-81	SD2-5	S-domain-2 5 (.1)
AT1G61370	271 / 5e-79		S-locus lectin protein kinase family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G212000 [exp]	1574 / 0	AT5G60900	655 / 0.0	receptor-like protein kinase 1 (.1)
Potri.T084300 [exp]	994 / 0	AT5G60900	645 / 0.0	receptor-like protein kinase 1 (.1)
Potri.T084401 [exp]	992 / 0	AT5G60900	641 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G014100 [exp]	895 / 0	AT5G60900	669 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G014600 [exp]	884 / 0	AT5G60900	666 / 0.0	receptor-like protein kinase 1 (.1)
Potri.T084200 [exp]	828 / 0	AT5G60900	573 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G228200 [exp]	822 / 0	AT5G60900	601 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G153800 [exp]	787 / 0	AT5G60900	545 / 0.0	receptor-like protein kinase 1 (.1)
Potri.001G014700 [exp]	769 / 0	AT5G60900	575 / 0.0	receptor-like protein kinase 1 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10031230 [exp]	953 / 0	AT5G60900	388 / 4e-123	receptor-like protein kinase 1 (.1)
Lus10004365 [exp]	729 / 0	AT5G60900	545 / 0.0	receptor-like protein kinase 1 (.1)
Lus10024195 [exp]	714 / 0	AT5G60900	367 / 3e-114	receptor-like protein kinase 1 (.1)
Lus10031231 [exp]	701 / 0	AT5G60900	536 / 2e-180	receptor-like protein kinase 1 (.1)
Lus10031805 [exp]	696 / 0	AT5G60900	530 / 5e-178	receptor-like protein kinase 1 (.1)
Lus10010992 [exp]	681 / 0	AT5G60900	540 / 0.0	receptor-like protein kinase 1 (.1)
Lus10036639 [exp]	497 / 3e-164	AT5G60900	394 / 1e-125	receptor-like protein kinase 1 (.1)
Lus10042940 [exp]	493 / 5e-163	AT5G60900	381 / 1e-120	receptor-like protein kinase 1 (.1)
Lus10040160 [exp]	423 / 3e-138	AT5G60900	267 / 1e-88	receptor-like protein kinase 1 (.1)
Lus10030400 [exp]	409 / 5e-135	AT5G60900	356 / 1e-115	receptor-like protein kinase 1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0016 [poplar] [flax]	PKinase	PF00069 [poplar] [flax]	Pkinase	Protein kinase domain
CL0016 [poplar] [flax]		PF01453 [poplar] [flax]	B_lectin	D-mannose binding lectin

Representative CDS sequence

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>Potri.T084500.1 pacid=42812781 polypeptide=Potri.T084500.1.p locus=Potri.T084500 ID=Potri.T084500.1.v4.1 annot-version=v4.1

ATGGCCTTTCCTATTCTTCATCTTTCGTTTTCCTTGCTCATTATGCTACCTCCTTTTGCTGTTTCTCAAACTGGTGGTAATATAACTGTGGGTGCTTCCC

TTTCCACTTCTGAAAACACCTCATGGCTCTCACCTTCTGGTGACTTTGCCTTTGGTTTTCATCCACTGTATGGCAACAAATATCTCTTCTTGCTTGCCAT

ATGGTACGATAAAATACCAGAAAAAACCATAGTGTGGTATGCAAATGGAGATAAACCTGCACCAACAGGGTCCAAGGCAGTGCTGACTGCCAATCGCGGG

ATTTCACTTACTGACCCTCAAGGCAGAGAGTTGTGGAGATCCGAGACAATCATTGGTGTTGTTGCCTACGGTGCCATGACTGACAAAGGCAACTTCGTGC

TTCAAGATCGTGTTTCTGATAAGCTGTGGGAGAGTTTCAAGAATCCTGCTGACACTTTACTGCCTTCACAAGTCTTGGACAGGGGGATGACCCTTTCTTC

TCGCCAATCAGAAAACAACTTTTCTATGGGAAGGTTCCAGCTTAAACTTACAGATGACGGGAATCTTGAGCTAGCAACAATAAACCTGCCTAGTGATTAT

ACTAATGAACCTTATTATAAAAGTGGTACCGATGGTGGGTTGGATTCATCGAGTCCTGGCTATCAAGTGGTCTTTAATGAGTCAGGATACCTGTATATAT

TGAGGGAGAATGACCAAATATTCTCTCTAACACAGAGAGTGACTGCCTCCACTGGAGACTTCTATCGCAGAGCAACTCTCAACTTTGACGGACTTTTCAC

CCAGTATTATCACCCAAAAGCATCTACTGGCAATGAAAGGTGGACACCAATTTGGTCTCAACCAGATAATATTTGCCAAGCAAGTTTTGTTAGTTCTGGC

AGTGGAACCTGTGGGTTCAACAGTGTCTGCAGGCTGAATTCAGATCGAAGACCAATCTGCGAATGCCCTGGAGGATACTCGTTACTCGATCCAAGTGATC

AGTATGGAAGTTGCAGACCAAACTACACACAAAGCTGTGAAGAAGATGAGGTGGCTCCTGTGGAAGATTTGTACGATTTTGAAGAACTTACAAATACAGA

TTGGCCAACATCTGACTACGCTCTCTTGAAGCCTTTCACTGAAGAAAAGTGCAGACAGTCTTGCTTGAATGATTGTATGTGTGCTGTCGCTATTTTCAGA

TCTGGTGATATGTGTTGGAAGAAGAAGCTGCCACTCTCGAATGGAAGAGTACAAACTAATCTTGATGGGAAAGCTCTTCTCAAAGTTAGGAGAAGTAATG

TCAATCCACGAAGTCCTTATTTCCCTAACAACAAAAAAGACAGAGACGGTTTGATCCTGGTGGGATCTGTGTTTTTGGGCTGCTCTGTGTTTGTGAACTT

TTTGTTGGTTTGTGCAATTTTTATGTGTTTTTTTTTCATCTACCGCAGGAGAACAAAGAGAATTCCTCAGAAAGACGGTGCTGTCGAAACAAATTTGCGG

TGTTTTACTTACCAAGAGCTTGCAGAAGCAACAGAGGGGTTCAAGGAAGAGTTGGGAAGAGGAGCATTTGGAGTTGTTTACAAAGGGGTGGTGCATATAG

GGTCTAGCATTGTTGTGGCTGTGAAGAAGCTAAATAATGTGGCAGAAGATAGAGTGAGGGAATTCAAGACGGAGGTAAATGTGATCGGCCAGACCCATCA

CAAGAATCTGGTTCGGTTGCTGGGATTCTGCGAAGAAGGAGATCAGCGGTTGTTGGTGTATGAGTTCATGAGCAATGGAAGTCTATCGAGTTTTATTTTT

CAAGATGCAAAACCTGGTTGGAAGATAAGAATCCAAATTGCCTTTGGAGTTGCAAGAGGACTTTTGTACTTGCATGAAGAGTGCAGCAATCAGATTATCC

ATTGTGACATCAAGCCCCAGAATATACTTCTGGATGAATATTACAATGCAAGGATATCTGACTTTGGTTTGGCAAAGCTCTTGTTGCTGGATCAGAGCCA

GACCCATACAGCCATCAGAGGGACAAAAGGGTATGTTGCACCTGAATGGTTCAGGAACTTGCCCGTCACTGTGAAGGTGGATGTGTATAGCTATGGTGTA

CTTCTGCTAGAGATCATTTGTTGCAGAAGAAATGTGGATAGCAAAGCAACCATAGAAGAACAGGCAATTTTAACAGACTGGGCATATGACTGTTATCGTG

AAGGGACATTGGATGCCCTCGTTGGATCTGATACCGGAGCCTTAGATGACATAGAAAAGCTAGAGAGGTTTCTGATGATTGCTTTCTGGTGTATTCAGGA

AGATCCATCTCTCCGACCCACCATGAGGAAAGTTACACAGATGCTTGAAGGAGTAGTCGAAGTGCCTGTTCCACCATGTCCATGCCTTCTTTACGCAGCA

AGTTAA

AA sequence

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>Potri.T084500.1 pacid=42812781 polypeptide=Potri.T084500.1.p locus=Potri.T084500 ID=Potri.T084500.1.v4.1 annot-version=v4.1

MAFPILHLSFSLLIMLPPFAVSQTGGNITVGASLSTSENTSWLSPSGDFAFGFHPLYGNKYLFLLAIWYDKIPEKTIVWYANGDKPAPTGSKAVLTANRG

ISLTDPQGRELWRSETIIGVVAYGAMTDKGNFVLQDRVSDKLWESFKNPADTLLPSQVLDRGMTLSSRQSENNFSMGRFQLKLTDDGNLELATINLPSDY

TNEPYYKSGTDGGLDSSSPGYQVVFNESGYLYILRENDQIFSLTQRVTASTGDFYRRATLNFDGLFTQYYHPKASTGNERWTPIWSQPDNICQASFVSSG

SGTCGFNSVCRLNSDRRPICECPGGYSLLDPSDQYGSCRPNYTQSCEEDEVAPVEDLYDFEELTNTDWPTSDYALLKPFTEEKCRQSCLNDCMCAVAIFR

SGDMCWKKKLPLSNGRVQTNLDGKALLKVRRSNVNPRSPYFPNNKKDRDGLILVGSVFLGCSVFVNFLLVCAIFMCFFFIYRRRTKRIPQKDGAVETNLR

CFTYQELAEATEGFKEELGRGAFGVVYKGVVHIGSSIVVAVKKLNNVAEDRVREFKTEVNVIGQTHHKNLVRLLGFCEEGDQRLLVYEFMSNGSLSSFIF

QDAKPGWKIRIQIAFGVARGLLYLHEECSNQIIHCDIKPQNILLDEYYNARISDFGLAKLLLLDQSQTHTAIRGTKGYVAPEWFRNLPVTVKVDVYSYGV

LLLEIICCRRNVDSKATIEEQAILTDWAYDCYREGTLDALVGSDTGALDDIEKLERFLMIAFWCIQEDPSLRPTMRKVTQMLEGVVEVPVPPCPCLLYAA

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T084500 [exp]	0	1

Potri.T084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T084500 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T084500 coexpression network