Plant FIBer expression Database

Potri.T084701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 550 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 362 / 2e-112 lectin protein kinase family protein (.1)
AT4G32300 300 / 1e-89 SD2-5 S-domain-2 5 (.1)
AT5G24080 280 / 1e-85 Protein kinase superfamily protein (.1)
AT2G19130 283 / 4e-83 S-locus lectin protein kinase family protein (.1)
AT5G35370 280 / 7e-82 S-locus lectin protein kinase family protein (.1)
AT4G00340 276 / 1e-80 RLK4 receptor-like protein kinase 4 (.1)
AT1G11280 265 / 7e-77 S-locus lectin protein kinase family protein (.1.2.3.4)
AT4G21390 262 / 2e-75 B120 S-locus lectin protein kinase family protein (.1)
AT4G21380 261 / 5e-75 ARK3 receptor kinase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G211800
[exp]
1575 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211366
[exp]
1465 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085000
[exp]
1421 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085150
[exp]
1411 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211700
[exp]
1335 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Potri.T084900
[exp]
1318 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085100
[exp]
1300 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084601
[exp]
1294 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
Potri.T084800
[exp]
1273 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024195
[exp]
816 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
813 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
797 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031230
[exp]
640 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
597 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
590 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
476 / 4e-156 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
460 / 5e-150 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
392 / 2e-128 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10006052
[exp]
374 / 6e-117 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
Representative CDS sequence
>Potri.T084701.1 pacid=42812801 polypeptide=Potri.T084701.1.p locus=Potri.T084701 ID=Potri.T084701.1.v4.1 annot-version=v4.1
ATGCAAGGTCTTCAAATACAGTATCTTCACATCATGGATTTTCAACTACCATATTGTTTTTTCTTCCTTGTTCTTCTGCTGCTGCCATTTTCTGGCAATG
GTCAGGCTCACAGCAACATATCTTCGGGCTTATTTCTCACTGCTGCAAGTGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCA
ACAAGTTGGTGATGCTGGCTACCTACTTGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAACAGAAATGATCTAGTTCAGGGG
GGATCAAGAGTACAACTTACCAGAGATGGAGAGTTGGTTCTAAATGATCAATCAGGCAGAACAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCT
ATGCAGCCATGCTTGACACAGGAAACTTCGTGCTAGCAAGCCAAGCTGATGCTAATTTGTGGCAGAGTTTTGATGAACCAACAGATACCCTGTTGCCCTC
ACAAAATCTGAATTCGGGTGCTCAACTTATTGCTCCCTACCTGGAAAAGAATTATTCAGAAGGAAGATACAAGTTCATTCTACAAGCTGATGGGAATCTC
ATCTTGTACACCACACACTATCCGTTAACTACCTCGAATTTTGCTTATTGGTCAACCCAAAGTTCTATAGGTAGCGGTTATCAGGTGATCTTTAACCAGT
CTGGCTTTATGTACCTTGTAGCTAGAAATGGTACTGTACTTAATCCTGTATTCTCTAATTCAGTATCAATGCAAGATCTCTACTTGAGGGCAACCCTGGA
CTATGATGGAGTTCTTAGGCAATATGTTTATCCAAAGACTGCTTCCAGTAGCAGAAGCAGGGCTATGGCCTGGACGACTTTGTCAAACTCCATACCATCA
AATATCTGCTTGAGAATTACGGGACAAGAAGGCGGTGGAGCTTGCGGTTTCAACAGCTATTGCAGATTAGCAGATGACCAAAGACCAAGTTGCAAGTGTC
TTCCTGGTTACACTTTCTTTGATCCAAATGATGAGAGGAAGGGATGCAAGAAAGATTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAG
CTTTGAGATCAAGGAAATGCCTAACACAAACTGGCCGTTTAATGATTATGAAATGTTTGGTTTAGTGGACGAGGATTGGTGCAGACAGGCTTGCTTAAGT
GACTGTTATTGTGCTGTTGCCATTTTTAACACTGCTGGACAATGTTGGATGAAGAGAGTCCCTCTCTCGAATGGGGTAACAGATCCAAGTGTTGGTGGAA
AAGCCCTGATAAAAGTAAGGAAAGGCAACTCGACTGCAGGTTCAAGTGCAAAGAAGTGTGATAGATCGAATTTGATCACAACAGGCTCGGTGCTTTTAGG
TAGCTCCATCTTTCTAATTGTTCTCTCACTGCTAGGGATCTATGTGTTCTTTTCTCGATGGAACCGACAGCAACAAAAAATGATACCGCAACACCGTCTC
ATGCCAGACATGAATATGCAGAATTTCACTTACAATGAGCTCGAAAGAGCTACAGGAGGATTCACGGAAGAACTTGGTAGAGGTGCCTTTGGAACTGTTT
ACAAAGGGGTACTAGCGAACGAAGACAAACCACTCATTGCAGTGAAGAAGTTAGATCAGATGGCCGGAGAGGGCGACAGAGAATTCAATACAGAAGTGAA
AGTTATTGGAAGAACAAATCACAAGAATTTGGTTCAACTTATTGGATTCTGTAACGAAGGGCAACATCGCCTTCTGGTCTACGAATACATGAGCAATGGC
TCTTTGGCCAATTTTCTCTTTGGAGATTCAAGGCCTAACTGGTACCGAAGAATGCAAATTGCTTTCGATATAGCCAGAGGGCTCCTTTACCTCCATGAAG
AATGCAGCTCCCAGATAATCCATTGTGATATCAAACCTCAAAATATCCTCCTCGACAAATCTTTTAATGCAAGGATTTCTGATTTCGGAATAGCCAAGCT
GCTGAAGACAGACCAAACTAAAACAACTACAGCAATCAGGGGGACCAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTGTCACAACCAAAGTC
GATACCTACAGCCTTGGCATTCTTTTGCTGGAGCTAGTTTGTTGCAGAAAGAACTTTGATATTGATAAGAAAGAAGGTCAGATAGTTCTTGCAGACTGGG
CATGGGATTGCCTTAAAGAAGGAAAGTTAGACCTTTTAGTTGAAGATGATGAAGAGGCAGCAGAAGACATGAAAACGGTAGAGAGGTTTGTGATTGTTGC
AATTTGGTGCCTTCAAGAGGATCCATCTTTAAGACCTGAAATGAAGAAAGTTGTGCTGATGCTAGAAGGAGCTGTTCAAGTCTCTATTCCTCCTAATCCT
TCATCATTTATCAGCGCAATCTAA
AA sequence
>Potri.T084701.1 pacid=42812801 polypeptide=Potri.T084701.1.p locus=Potri.T084701 ID=Potri.T084701.1.v4.1 annot-version=v4.1
MQGLQIQYLHIMDFQLPYCFFFLVLLLLPFSGNGQAHSNISSGLFLTAASDNLPWTSPSGEFAFGFQQVGDAGYLLAIWFNKIPERTIVWSANRNDLVQG
GSRVQLTRDGELVLNDQSGRTIWSPVFGGSGAAYAAMLDTGNFVLASQADANLWQSFDEPTDTLLPSQNLNSGAQLIAPYLEKNYSEGRYKFILQADGNL
ILYTTHYPLTTSNFAYWSTQSSIGSGYQVIFNQSGFMYLVARNGTVLNPVFSNSVSMQDLYLRATLDYDGVLRQYVYPKTASSSRSRAMAWTTLSNSIPS
NICLRITGQEGGGACGFNSYCRLADDQRPSCKCLPGYTFFDPNDERKGCKKDFISQDCDHPSQEIDSFEIKEMPNTNWPFNDYEMFGLVDEDWCRQACLS
DCYCAVAIFNTAGQCWMKRVPLSNGVTDPSVGGKALIKVRKGNSTAGSSAKKCDRSNLITTGSVLLGSSIFLIVLSLLGIYVFFSRWNRQQQKMIPQHRL
MPDMNMQNFTYNELERATGGFTEELGRGAFGTVYKGVLANEDKPLIAVKKLDQMAGEGDREFNTEVKVIGRTNHKNLVQLIGFCNEGQHRLLVYEYMSNG
SLANFLFGDSRPNWYRRMQIAFDIARGLLYLHEECSSQIIHCDIKPQNILLDKSFNARISDFGIAKLLKTDQTKTTTAIRGTKGYVAPEWFKNLPVTTKV
DTYSLGILLLELVCCRKNFDIDKKEGQIVLADWAWDCLKEGKLDLLVEDDEEAAEDMKTVERFVIVAIWCLQEDPSLRPEMKKVVLMLEGAVQVSIPPNP
SSFISAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T084701
[exp]
0 1

Potri.T084701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.