Plant FIBer expression Database

Potri.T084900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 547 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 352 / 8e-109 lectin protein kinase family protein (.1)
AT2G19130 302 / 4e-90 S-locus lectin protein kinase family protein (.1)
AT4G00340 290 / 1e-85 RLK4 receptor-like protein kinase 4 (.1)
AT5G35370 284 / 2e-83 S-locus lectin protein kinase family protein (.1)
AT4G21380 276 / 2e-80 ARK3 receptor kinase 3 (.1)
AT5G24080 264 / 9e-80 Protein kinase superfamily protein (.1)
AT1G11280 273 / 1e-79 S-locus lectin protein kinase family protein (.1.2.3.4)
AT4G32300 263 / 5e-76 SD2-5 S-domain-2 5 (.1)
AT4G11900 259 / 4e-74 S-locus lectin protein kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T085100
[exp]
1496 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211700
[exp]
1481 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Potri.T084601
[exp]
1441 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
Potri.T084800
[exp]
1429 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
Potri.003G211366
[exp]
1341 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211800
[exp]
1338 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084701
[exp]
1328 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085000
[exp]
1312 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085150
[exp]
1310 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024195
[exp]
843 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
832 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
818 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031230
[exp]
657 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
625 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
594 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
494 / 3e-163 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
481 / 3e-158 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
404 / 6e-133 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10006052
[exp]
374 / 9e-117 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
Representative CDS sequence
>Potri.T084900.1 pacid=42812780 polypeptide=Potri.T084900.1.p locus=Potri.T084900 ID=Potri.T084900.1.v4.1 annot-version=v4.1
ATGCAATGTCTTAAAAAACAGTATCTTCACATCATGGATTTTCAACTACCGTATTGTTTTATCTTCCTTCTTCTTCTGCTGCTGCCATTTTCTAGCAATG
GTCAGGCTCACAGCAACATATCTTTGGGCTTATCTCTCACTGCTGCAAGTGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCA
GCAAGTTGGTGATGCTGGCTACCTACTTGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAATAGAAATGATCTAGTTCAGGGG
GGATCAAGAGTACAACTTACGGCAGATGGTGAGTTGGTTCTAAATGATCAATCAGGCAGACAAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCT
ATGCAGCCATGCTTGACACGGGAAACTTCGTGGTAGCAAGCCAAGCTGGTGCCAATTTGTGGCAGAGTTTTGATGAACCAACAGACACACTGTTGCCCAC
ACAAAATCTGAATTTAGGTGCTCAACTAATTGCTCCCTACCTGGAAAAGAATTATTCACATGGAAGATTCATGTTCATTCTACAAACTGACGGGAATCTC
TTATTGTACACAACACGTTATCCAACAACTACAGTAAATTATGCTTATTGGTCTACCCAGGATTCTATTGGAAGCGGTTATAGGGTGGTCTTTAACCAGT
CTGGCTATATGTACCTCGCAGCCCAAAATGGCACTATGCTTAATTCGGTATTCTCTAATTCAGTATCAATGCAAGATTTCTACTTGAGGGCTACCATAGA
CTATGATGGAGTTTTTAGGCAATATGCTTATCCAAAGACTGCTTCCAGTAGCACAAGGTGGCCAATGGCCTGGACGACTTTGCCAAACTTCATACCCTCA
AATATCTGCGTGGTAATTAGGGGACCAGTAGGCAGTGGAGCTTGCGGTTTCAACAGTTATTGCATATTAGAAGATGACCAAAGACCGACATGCAAGTGTC
CTCCTGGTTACACTTTCTTTGATCCAAATGATGAGAGGAAGGGATGCAAGAAAAACTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAA
CTTTATGATCAGGGATATGCTTAACACAAACTTTCCATATACTGATTATGATGATTTTACTTCAGTGGACGAGGATTGGTGCAGACAAGCTTGCTTGAGT
GACTGCTATTGTGCTGTTGCCACTTATAACAGTGGAAGCTGTTGGAAGAAGAGAGGCCCTCTCTCGAATGGGGTAACAGATCCAAGTATTGGTGATAAAG
CCCTGCTGAAAGTAAGGAAAGGCAACGGGACTGCAGGTTCAAGTGCAAAGAAGAGTGATCGATCAACTTTGATCACAACAGGATCGGTGCTTTTAGGTAG
CTCCATCTTTCTAATTGTTCTCTCTCTGCTAGGAATCTACGTGTTCTTTACTCGATGGAACCAACAAAAACGAAAGGTGGTACCGCAACTCCATGTCATG
CCAGAAATGAATCTGCAGAATTTTACTTACAATGAGCTGGAAACAGCTACAGGAGGATTCAAGGAAGAACTTGGTAGGGGTGCTTTTGGAATTGTTTACA
GAGGGGCACTAGCCAACGAAGACAAACCGCTCATCGCAGTAAAGAAATTAGAAAAGATGGCCGGGGAGGGCGACACAGAATTCAATACAGAAGTGAAAGT
TATTGGAAGAACAAATCACAAGAATCTGGTTCAACTTGTTGGATTCTGTAACGAAGGGGAAAATCGCCTTCTGGTCTACGAGTACATGAGCAGTGGCTCC
TTGTCGAACTACATATTTGGATATTCAAGGCCTAGTTGGCACCGAAGAATGCAAATTGCTTTCGGTGTAGCCAGAGGGCTCCTTTACCTCCATGAAGAAT
GCAGCTCCCAGATAATCCATTGTGATATCAAGCCTCCAAATATCCTCCTCGACGAATATCTTAATGCAAGGATTTCTGATTTCGGACTAGCCAAGCTGTT
GAAGACGGACCAGACTAAAACAACTACAGCAATCAGGGGGACGAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTATCACAACCAAAGTAGAC
ACCTACAGCTTTGGCATTCTCTTGCTGGAGCTTGTATGCTGCAGAAAGAACTTTGAGATTAATGCTATGCAAGAACATCAGATAGTTCTTGCAGACTGGG
CGTGTGATTGCCTTAAAGAAGGAAAGTTGAATCTTTTAGTAGAAGAAGATGAAGAGGCAATGGAAGACATGAAAAGGGTAGAGAGGTTTGTGATGGTTGC
AATTTGGTGCATTCAGGAGGATCCATCTTTAAGACCTGGAATGAAGAAAGTTGTGCAGATGTTAGAAGGAGGTGTTCAAGTCTCTGTTCCTCCTGATCCT
TCATCATTTATCAGCACAATCTAA
AA sequence
>Potri.T084900.1 pacid=42812780 polypeptide=Potri.T084900.1.p locus=Potri.T084900 ID=Potri.T084900.1.v4.1 annot-version=v4.1
MQCLKKQYLHIMDFQLPYCFIFLLLLLLPFSSNGQAHSNISLGLSLTAASDNLPWTSPSGEFAFGFQQVGDAGYLLAIWFNKIPERTIVWSANRNDLVQG
GSRVQLTADGELVLNDQSGRQIWSPVFGGSGAAYAAMLDTGNFVVASQAGANLWQSFDEPTDTLLPTQNLNLGAQLIAPYLEKNYSHGRFMFILQTDGNL
LLYTTRYPTTTVNYAYWSTQDSIGSGYRVVFNQSGYMYLAAQNGTMLNSVFSNSVSMQDFYLRATIDYDGVFRQYAYPKTASSSTRWPMAWTTLPNFIPS
NICVVIRGPVGSGACGFNSYCILEDDQRPTCKCPPGYTFFDPNDERKGCKKNFISQDCDHPSQEIDNFMIRDMLNTNFPYTDYDDFTSVDEDWCRQACLS
DCYCAVATYNSGSCWKKRGPLSNGVTDPSIGDKALLKVRKGNGTAGSSAKKSDRSTLITTGSVLLGSSIFLIVLSLLGIYVFFTRWNQQKRKVVPQLHVM
PEMNLQNFTYNELETATGGFKEELGRGAFGIVYRGALANEDKPLIAVKKLEKMAGEGDTEFNTEVKVIGRTNHKNLVQLVGFCNEGENRLLVYEYMSSGS
LSNYIFGYSRPSWHRRMQIAFGVARGLLYLHEECSSQIIHCDIKPPNILLDEYLNARISDFGLAKLLKTDQTKTTTAIRGTKGYVAPEWFKNLPITTKVD
TYSFGILLLELVCCRKNFEINAMQEHQIVLADWACDCLKEGKLNLLVEEDEEAMEDMKRVERFVMVAIWCIQEDPSLRPGMKKVVQMLEGGVQVSVPPDP
SSFISTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T084900
[exp]
0 1

Potri.T084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.