Plant FIBer expression Database

Potri.T085000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 559 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 371 / 7e-116 lectin protein kinase family protein (.1)
AT4G32300 290 / 5e-86 SD2-5 S-domain-2 5 (.1)
AT2G19130 282 / 9e-83 S-locus lectin protein kinase family protein (.1)
AT4G00340 280 / 4e-82 RLK4 receptor-like protein kinase 4 (.1)
AT5G24080 266 / 3e-80 Protein kinase superfamily protein (.1)
AT5G35370 272 / 6e-79 S-locus lectin protein kinase family protein (.1)
AT1G11280 259 / 1e-74 S-locus lectin protein kinase family protein (.1.2.3.4)
AT4G21380 243 / 1e-68 ARK3 receptor kinase 3 (.1)
AT4G21390 241 / 1e-67 B120 S-locus lectin protein kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T084701
[exp]
1441 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211800
[exp]
1441 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211366
[exp]
1421 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085150
[exp]
1418 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084900
[exp]
1299 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085100
[exp]
1297 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211700
[exp]
1286 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Potri.T084601
[exp]
1266 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
Potri.T084800
[exp]
1238 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024195
[exp]
850 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
832 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
826 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031230
[exp]
659 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
617 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
600 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
491 / 6e-162 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
471 / 3e-154 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
408 / 2e-134 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10006052
[exp]
371 / 6e-116 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
Representative CDS sequence
>Potri.T085000.3 pacid=42812774 polypeptide=Potri.T085000.3.p locus=Potri.T085000 ID=Potri.T085000.3.v4.1 annot-version=v4.1
ATGGATTTTCAACTATCATATTGTTTTTTCTTCCTTCTTCTTCTGCTTCAGCTTCTGCCATTCTCCATCAATGGTCAGACTTACAGAAACATATCTTTGG
GGTCATCTCTCACTGCTGCAAGAGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCAGCAAGTTGGTGATGCTGGCTACCTACT
TGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAATAGAAATGATCTAGTTCAGGGGGGATCAAGAGTACAACTTACGACAGAT
GGTGAGTTGGTTCTAAATGATCAATCAGGCAGACAAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCTATGGAGCCATGCTTGACACAGGAAACT
TTGTGGTAGCAAGCCAAGCTGCTGCTAATTTGTGGCAGAGTTTTGATGAACCAACAGATACCCTGTTGCCCTCACAAAATATGAATTCGGGTGCTCAACT
TATTGCTCCCTACCTGGAAAAGAATTATTCAGAAGGAAGATACAAGTTCATTCTACAAGCTGATGGGAATCTCATCTTGTACACCACACACTATCCGTTA
ACTACCTCAAATTTTGCTTATTGGTCAACCCAAAGTTCTAATGGAAGCGGTTATAGGGTGGTCTTTAACCAGTCTGGCTATATGTACCTTGTAGCTAGAG
ATGGCACCATGCTTAATTCGGTATTCTCTAATTCAGTATCAATGCAAGATCTCTACTTGAGGGCAACCCTGGACTATGATGGAGTTCTTAGGCAATATGT
TTATCCAAAGACTGCTTCCAGTAGCAGAAGCAGGGCTATGGCCTGGACGACTTTGTCAAACTCCATACCATCAAATATCTGCTTGAGAATTACGGGACAA
GAAGGCGGTGGAGCTTGCGGTTTCAACAGCTATTGCAGATTAGCAGATGACCAAAGACCAAGTTGCAAGTGTCCTCCTGGTTACACTTTCTTTGATCCAA
ATGATGAGAGGAAGGGATGCAAGAAAAACTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAGCTTTGAGATCAAGGAAATGCCTAACAC
AAACTGGCCATTTAATGATTATGAAATGTTTGGTTCAGTGGACGAGGATTGGTGCAGACAGGCTTGCTTAAGTGACTGTTATTGTGCTGTTGCCATTTTT
AACACTGCTGGACAATGTTGGATGAAGAGAGTCCCTCTCTCGAATGGGGTAACAGATCCAAGTGTTGGTGGAAAAGCCCTGATAAAAGTAAGGAAAGGCA
ACTCGACTGCAGGTTCAAGTGCAAAGAAGTGTGATAGATCGAATTTGATCACAACAGGCTCGGTGCTTTTAGGTATCTCCATCTTTCTAATTGTTCTCTC
ATTGCTAGGGATCTATGTGTTCTTTTCTCGATGGAACCAACAGCAACAAACAATGATACCGCAACACCGTGTCAAGCCAGACATCATGAATATGCAGAAT
TTCACTTACAGTGAGCTCGAAAAAGCTACAGGAGGATTCAAGGAAGAACTTGGTAGCGGTGCCTTTGGAACTGTTTACAAAGGGGTACTAGCGAACGAAG
ACAAACCACTCAATGCAGTGAAGAAGTTAGATCAGATGGCCGGAGAGGGCGACAGAGAATTCAATACAGAAGTGAAAGTTATTGGAAAAACTAATCACAA
GAATTTGGTTCAACTTGTTGGATTCTGTAACGAAGGGCAACATCGCCTTCTGGTCTACGAGTACATGAGCAATGGCTCTTTGGCCAATTTTCTCTTTGGA
GATTCAAGGCCTAACTGGTATCGAAGAACACAAATTGCTTTCGATATAGCCAGAGGGCTCCTTTACCTCCACGAAGAATGCAGCTCTCAGATAATCCATT
GTGATATCAAGCCTCAAAATATCCTCCTCGACAAATCTTTTGTTGAAGTTTGCTTTAAGATGCTGCGGATTTCTGATTTCGGACTAGCCAAGCTGTTGAA
GACAGACCAAACTAAAACAACTACAGCAATCAGGGGGACCAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTGTCACAACCAAAGTAGATACC
TACAGCTTTGGCATTCTTTTGCTGGAGCTAGTATGCTGTAGAAAGAACTTTGAGATTAATGCTATTCAAGAACATAAGATAGTTCTTGCAGACTGGGCAT
GTGATTGCCTTAAAGAAGGAAAGTTAGATCTTTTAGTAGAAGAAGATGAAGAGGCAACAGAAGACATGAAAACGGTGGAGAGGTTTGTGATGGTTGCAAT
TTGGTGCATTCAAGATGATCCATCTTTAAGACCTGGAATGAAGAAAGTTGTGCAGATGCTAGAAGGAGCTGTTCAAGTCTCTATTCCTCCTGATTTTTCA
TCATTTATCAGCATAATCTAA
AA sequence
>Potri.T085000.3 pacid=42812774 polypeptide=Potri.T085000.3.p locus=Potri.T085000 ID=Potri.T085000.3.v4.1 annot-version=v4.1
MDFQLSYCFFFLLLLLQLLPFSINGQTYRNISLGSSLTAARDNLPWTSPSGEFAFGFQQVGDAGYLLAIWFNKIPERTIVWSANRNDLVQGGSRVQLTTD
GELVLNDQSGRQIWSPVFGGSGAAYGAMLDTGNFVVASQAAANLWQSFDEPTDTLLPSQNMNSGAQLIAPYLEKNYSEGRYKFILQADGNLILYTTHYPL
TTSNFAYWSTQSSNGSGYRVVFNQSGYMYLVARDGTMLNSVFSNSVSMQDLYLRATLDYDGVLRQYVYPKTASSSRSRAMAWTTLSNSIPSNICLRITGQ
EGGGACGFNSYCRLADDQRPSCKCPPGYTFFDPNDERKGCKKNFISQDCDHPSQEIDSFEIKEMPNTNWPFNDYEMFGSVDEDWCRQACLSDCYCAVAIF
NTAGQCWMKRVPLSNGVTDPSVGGKALIKVRKGNSTAGSSAKKCDRSNLITTGSVLLGISIFLIVLSLLGIYVFFSRWNQQQQTMIPQHRVKPDIMNMQN
FTYSELEKATGGFKEELGSGAFGTVYKGVLANEDKPLNAVKKLDQMAGEGDREFNTEVKVIGKTNHKNLVQLVGFCNEGQHRLLVYEYMSNGSLANFLFG
DSRPNWYRRTQIAFDIARGLLYLHEECSSQIIHCDIKPQNILLDKSFVEVCFKMLRISDFGLAKLLKTDQTKTTTAIRGTKGYVAPEWFKNLPVTTKVDT
YSFGILLLELVCCRKNFEINAIQEHKIVLADWACDCLKEGKLDLLVEEDEEATEDMKTVERFVMVAIWCIQDDPSLRPGMKKVVQMLEGAVQVSIPPDFS
SFISII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T085000
[exp]
0 1

Potri.T085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.