Plant FIBer expression Database

Potri.T085100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60900 554 / 0 RLK1 receptor-like protein kinase 1 (.1)
AT1G34300 361 / 3e-112 lectin protein kinase family protein (.1)
AT2G19130 313 / 4e-94 S-locus lectin protein kinase family protein (.1)
AT4G32300 310 / 3e-93 SD2-5 S-domain-2 5 (.1)
AT4G00340 295 / 2e-87 RLK4 receptor-like protein kinase 4 (.1)
AT5G35370 281 / 4e-82 S-locus lectin protein kinase family protein (.1)
AT1G11280 279 / 9e-82 S-locus lectin protein kinase family protein (.1.2.3.4)
AT5G24080 267 / 8e-81 Protein kinase superfamily protein (.1)
AT4G11900 270 / 3e-78 S-locus lectin protein kinase family protein (.1)
AT4G21380 265 / 2e-76 ARK3 receptor kinase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T084900
[exp]
1496 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211700
[exp]
1494 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Potri.T084601
[exp]
1466 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
Potri.T084800
[exp]
1420 / 0 AT5G60900 485 / 3e-161 receptor-like protein kinase 1 (.1)
Potri.003G211800
[exp]
1338 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T084701
[exp]
1335 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
Potri.003G211366
[exp]
1326 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085000
[exp]
1316 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1)
Potri.T085150
[exp]
1296 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024195
[exp]
858 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1)
Lus10031231
[exp]
846 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Lus10031805
[exp]
832 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1)
Lus10031230
[exp]
673 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
Lus10004365
[exp]
638 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Lus10010992
[exp]
600 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1)
Lus10036639
[exp]
506 / 8e-168 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1)
Lus10042940
[exp]
490 / 1e-161 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Lus10030400
[exp]
404 / 6e-133 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Lus10006052
[exp]
384 / 1e-120 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0016 PKinase PF00069 Pkinase Protein kinase domain
CL0016 PF01453 B_lectin D-mannose binding lectin
Representative CDS sequence
>Potri.T085100.1 pacid=42812803 polypeptide=Potri.T085100.1.p locus=Potri.T085100 ID=Potri.T085100.1.v4.1 annot-version=v4.1
ATGCAATGTCTTACTATACAGTATCTTCACATCATGGATTTTAAACTACCATGTTTTTTCTTCCTTCTTCTTCTGCTGCTGCCATTTTCTAGCAATGGTC
AGGCTCACAGCAACATATCTTTGGGCTTATCTCTCACTGCTGCAAGTGATAACCTTCCTTGGACTTCACCATCTGGGGAATTTGCTTTTGGATTCCAACA
AGTCGGTGATGCTGGCTACCTACTTGCCATATGGTTCAACAAAATACCCGAAAGAACCATAGTCTGGTCAGCTAATAGAAATGATCTAGTTCAGGGGGGA
TCAAGAGTACAACTTACCAGAGATGGTGAGTTGGTTCTAAATGATCAATCAGGCAGAACAATATGGAGTCCAGTTTTTGGTGGAAGTGGAGCCGCCTATG
CAGCCATGCTTGACACAGGAAACTTTGTGCTAGCAAGCCAAGCTGGTGCCAATTTGTGGCAGAGTTTTGATGAACCAACAGACACACTCTTGCCCACACA
AAATCTGAATTTAGGTGCTCAACTAATTGCTCCCTACCTGGAAAAGAATTATTCACATGGAAGATTCAAGTTTAGTCTACAAACTGATGGGAATCTCATC
TTATCCACAACAAGTTATCCAAAAACTACCTCAAATTTTGCTTATTGGTCTAACCAAAGTTCTATTGGAAGCGGTTATAGGGTGATCTTTAACCAGTCTG
GCTATATGTACCTCGCAGACCAAAATGGCAATACGCTTAATTCGGTATTCTCTAATTCAGTATCAATGCAAGATTTCTACTTGAGGGCAACCCTGGACTA
TGATGGAGTTTTTAGGCAATATGCTTATCCAAAGACTGCTTCCAGTAGCACAAGGTGGCCTATGGCCTGGACGACTTTGCCAAACTTCATACCCTCAAAT
ATCTGCGTCGTAATTAGGGGACCAGTAGGCAGTGGAGCTTGCGGTTTCAACAGTTATTGCATATTAGGAGATGACCAAAGACCAAGATGCAAGTGTCCTC
CTGGTTACACATTCTTTGATCCAAATGATGAGAGGAAGGGATGCAAGAAAAACTTTATTTCACAGGATTGTGACCATCCATCGCAAGAAATAGATAACTT
TATGATCTGGGATATGCTTAACACAAACTTTCCATATACTGATTATGAATATTTTACTTCAGTGGACGAGGATTGGTGCAGACAAGCTTGCTTGAGTGAC
TGCTATTGTGCTGTTGCCACTTATAACAGCGGAGAATGTTGGAAGAAGAGAGGCCCTCTCTCGAATGGGGTAACAGATCCAAGTATTGGTCTTAAATCCC
TGATGAAAGTAAGGAAAGGCAACTGGACTGCAGGTTCAAGTGCAAAGAAGAGTGATCGATCAACTTTGATCACAACAGGATCGGTGCTTTTAGGTAGCTC
CATCTTTCTAATTGTTCTCTCTCTGCTAGGAATCTACGTGTTCTTTACTCGATGGAACCAACAAAAACAAAAGGTGGTACCGCAACTCCATGTCATGCCA
GAAATGAATCTGCAGAATTTTACTTACAATGAGCTGGAAACAGCTACAGGAGGATTCAAGGAAGAAGTTGGTAGGGGTGCTTTTGGAATTGTTTACAGAG
GGGCACTAGCCAACGAAGACAAACCGCTCATCGCAGTAAAGAAATTAGAAAAGATGGCCGGGGAGGGCGACACAGAATTCAAAACCGAAGTGAAAGTTAT
TGGCAGAACAAATCACAAGAATCTGGTTCAACTTGTTGGATTCTGTAACGAAGGGGAAAATCGCCTTCTGGTCTACGAGTACATGAGCGGTGGCTCCTTG
TCAAACTACATATTTGGATATTCAAGGCCTAGTTGGAACCGAAGAATGCAAATTGCTTTCGGTGTAGCCAGAGGGCTACTTTACCTCCATGAAGAATGCA
GCTCCCAGATAATCCATTGTGATATCAAGCCTCAAAATATCCTGCTCGACGAATCTCTTAACGCCAGGATATCAGATTTCGGACTAGCCAAGCTGTTGAA
GACGGACCAAACCAAAACAACGACAGCAATCAGGGGGACCAAAGGGTATGTAGCTCCTGAATGGTTCAAGAACCTGCCTGTCACAACCAAAGTAGATATC
TACAGCTTTGGCATTCTCTTGCTGGAGCTAGTTTGCTGCAGAAAGAACTTTGAGATTAATGCAATGCAAGAACATCAGATAGTTCTTGCAGACTGGGCAT
GTGATTGCCTTAAAGAAGGAAAGTTGAACCTTTTAGTAGAAGAAGACGGAGAGGCAATGGAAGACATGAAAAGGGTAGAGAGGTTTGTGATGGTTGCAAT
TTGGTGCATTCAGGAAGATCCATCTTTAAGACCTGGAATGAAGAAAGTTGTGCAGATGTTAGAAGGAGGTGTTCAAGTCTCTGTTCCTCCTGATCCTTCA
TCATTTATCAGCACAATCTAA
AA sequence
>Potri.T085100.1 pacid=42812803 polypeptide=Potri.T085100.1.p locus=Potri.T085100 ID=Potri.T085100.1.v4.1 annot-version=v4.1
MQCLTIQYLHIMDFKLPCFFFLLLLLLPFSSNGQAHSNISLGLSLTAASDNLPWTSPSGEFAFGFQQVGDAGYLLAIWFNKIPERTIVWSANRNDLVQGG
SRVQLTRDGELVLNDQSGRTIWSPVFGGSGAAYAAMLDTGNFVLASQAGANLWQSFDEPTDTLLPTQNLNLGAQLIAPYLEKNYSHGRFKFSLQTDGNLI
LSTTSYPKTTSNFAYWSNQSSIGSGYRVIFNQSGYMYLADQNGNTLNSVFSNSVSMQDFYLRATLDYDGVFRQYAYPKTASSSTRWPMAWTTLPNFIPSN
ICVVIRGPVGSGACGFNSYCILGDDQRPRCKCPPGYTFFDPNDERKGCKKNFISQDCDHPSQEIDNFMIWDMLNTNFPYTDYEYFTSVDEDWCRQACLSD
CYCAVATYNSGECWKKRGPLSNGVTDPSIGLKSLMKVRKGNWTAGSSAKKSDRSTLITTGSVLLGSSIFLIVLSLLGIYVFFTRWNQQKQKVVPQLHVMP
EMNLQNFTYNELETATGGFKEEVGRGAFGIVYRGALANEDKPLIAVKKLEKMAGEGDTEFKTEVKVIGRTNHKNLVQLVGFCNEGENRLLVYEYMSGGSL
SNYIFGYSRPSWNRRMQIAFGVARGLLYLHEECSSQIIHCDIKPQNILLDESLNARISDFGLAKLLKTDQTKTTTAIRGTKGYVAPEWFKNLPVTTKVDI
YSFGILLLELVCCRKNFEINAMQEHQIVLADWACDCLKEGKLNLLVEEDGEAMEDMKRVERFVMVAIWCIQEDPSLRPGMKKVVQMLEGGVQVSVPPDPS
SFISTI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T085100
[exp]
0 1

Potri.T085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.