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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G26170	1345 / 0		ARM repeat superfamily protein (.1)
AT2G46520	70 / 7e-12		cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
AT3G08960	67 / 8e-11		ARM repeat superfamily protein (.1)
AT3G59020	55 / 2e-07		ARM repeat superfamily protein (.1.2)
AT2G31660	48 / 3e-05	EMA1, URM9, SAD2	UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.008G109300 [exp]	1944 / 0	AT1G26170	1339 / 0.0	ARM repeat superfamily protein (.1)
Potri.014G100000 [exp]	69 / 1e-11	AT2G46520	1464 / 0.0	cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Potri.002G172700 [exp]	68 / 3e-11	AT2G46520	1421 / 0.0	cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Potri.016G119900 [exp]	64 / 4e-10	AT3G08960	1547 / 0.0	ARM repeat superfamily protein (.1)
Potri.014G149600 [exp]	61 / 5e-09	AT2G31660	1543 / 0.0	UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Potri.002G232600 [exp]	56 / 1e-07	AT2G31660	1499 / 0.0	UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Potri.008G085800 [exp]	48 / 4e-05	AT4G27640	1605 / 0.0	ARM repeat superfamily protein (.1)
Potri.010G169800 [exp]	48 / 4e-05	AT4G27640	1584 / 0.0	ARM repeat superfamily protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10035079 [exp]	1187 / 0	AT1G26170	1225 / 0.0	ARM repeat superfamily protein (.1)
Lus10000328 [exp]	632 / 0	AT1G26170	645 / 0.0	ARM repeat superfamily protein (.1)
Lus10031911 [exp]	254 / 8e-78	AT1G26170	283 / 1e-89	ARM repeat superfamily protein (.1)
Lus10007842 [exp]	67 / 6e-11	AT3G08960	1493 / 0.0	ARM repeat superfamily protein (.1)
Lus10004753 [exp]	64 / 5e-10	AT3G08960	1432 / 0.0	ARM repeat superfamily protein (.1)
Lus10025509 [exp]	62 / 2e-09	AT2G31660	1591 / 0.0	UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Lus10026726 [exp]	61 / 4e-09	AT2G31660	1084 / 0.0	UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1)
Lus10005969 [exp]	57 / 1e-08	AT2G46520	250 / 2e-77	cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10030241 [exp]	57 / 7e-08	AT2G46520	1438 / 0.0	cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Lus10029067 [exp]	52 / 4e-06	AT4G27640	1646 / 0.0	ARM repeat superfamily protein (.1)

PFAM info

Representative CDS sequence

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>Potri.T108626.1 pacid=42766861 polypeptide=Potri.T108626.1.p locus=Potri.T108626 ID=Potri.T108626.1.v4.1 annot-version=v4.1

ATGGCAAACCTAATCGATCAAGATCAAGAATGGCTACTCAATTGCCTGAATGCCACTCTCGATCCTAACCAGGAAATCCGTTCCTTGGCCGAAGTTTCTC

TTCGCCAAGCCTCTCTTCAACCAGGTTTTGGAGTGGCATTATCAAAAGTTGCTGCGAACAAGGAACTTCCTTTTGGATTGCGTCAGCTAGCTGCCGTACT

ATTGAAGCAATTTATCAAGACACATTGGCACGAAAGCGAGGAGTCCTTCGAGCCGCCTGCTGTTGCAACTGAAGAGAAGGAAGTTATACGGAGACTACTT

TTACCGTCGTTGGATGATTCTCATCGGAAAATTTGTACTGCAATTAGCATGGCTATTGCTTCGATTGCTGTTTATGACTGGCCTGAGAATTGGCCTGATT

TATTGCCGTTTCTTTTGAAGTTGATTAACGATCGAACTAATGTGAGCGGGGTGCATGGAGCTCTAAGGTGTCTGGCTCTTCTCTCTGGGGATTTGGATGA

TACAGTGGTGCCAACACTAGTACCAGTTTTGTTCCCATGCTTGCTTACAATTGTATCGTCACCTCAGAATTATGACAACTACTTGCGTACGAAAGCCCTT

ACAATAGTTTATTCTTGCGTGTCTGTGCTCGGGATCATGAGTGGTGTATATAAGACAGAAATCAGTGCCTTGATAACACCAATGCTTAAACCATGGATGG

ATCAGTTCTCTGTTATCTTAGAACCGCCTATGCAACCTGAAGATCCTGATAATTGGAGCTTGAGAATGGAGGTTTTAAAGTGCTTGAATCAGTTTGTTCA

GAATTTCCCTAGCCTTACTGAAAGTGAATTCATGGTGATAGTTGGACCCTTGTGGCAAACATTTGTAACATCTCTAAGTGTGTACGTGCGGTCATCAATT

GAATGTACAGAAGATCCCTATGGAGATAGATATGACTCTGATGGTGCTGAGAAAAGTCTTGATGCATTTGTCATCCAGCTTTTTGAGTTTTTGTTGACCA

TTGTGGGCAGTGCAAAATTAATGAAGGTAGTTAAGAATAACATCAAGGAGTTGGCATATTACACTATAGCTTTCCTGCAAATGACAGAACAACAAGTTCA

TACTTGGTCAAGGGATGCAAACCAATTTGTTGCTGATGAGGATGATGCTACTTATAGCTGTCGTGTTTCTGGTGTACTTTTGCTAGAGGAGGTGGTGAAT

TCTTTTGGCAGTGAAGGAATTTATGCCATTATAGATGCCATGAGAGAGAGATTCAATGAGTCTGAACGAGAAAAGGCTGCTGGTTCAGCAGCTTGGTGGC

GAATAAGGGAGTCTATCCTCTTTGCTTTGGCTGATCTCTCAGACCAATTGCTTGATGCAGAGGCATCAGGGATGATCAGTGTGAATTTAGGAAACCTTGT

AGAGCAGATTGTCACTATAGATGTTGGAACAGGGGTGCATGAATATCCCTTTCTTTATGCACGTATTTTTACATCAGTTGCTAAGTTCTCCTCTGTGATC

AGCCATGGAGTTCTCGAGCATTTCCTCCATGCTGCTATCAAGGGAGTTGGCATGAATGTGCCTCCACCTGTGAAGATGGGTGCTTGTCAGGCACTTTCTC

AACTCCTGCCTGAAGCTAACAAAGAAAATATTCAGCCTCAACTGATGGGCTTGTTTTCATCTCTCACTGATCTTCTTCATCAGGCATCTGATGAAACATT

ACACCTGGTGCTTGAAACACTGCAAGCATCTATTAAGGCAGTTCGTGAAGCAGCAGTATCATTCGAGTCTGTTGTCTCACCTGTAGTTCTTAATACATGG

GCATTGTATGTTTCTGATCCTTTTCTCAGTATTGATGCCATTGAGGTTCTGGAGGCCTTGAAAAATGCTCCTGGTGGTATTCATCCATTGGTTTCTCGAA

TTTTGCCGCATATCGGACCAATATTAAATAAACCTTACCAGCAGCCTGATGGATTGGTGGCCGGATCACTTGATTTGGTGACTATGCTATTAAAGAATGC

TCCAAGTGATATCATAAAAGCCATATATGATACTTGCTTTGATGCTGTTATTCGAATAGTCCTTCAAAGTGATGATCACAGTGAAATGCAGAATGCCACA

CAATGTCTGGCTTCATTTATATCCGGGGGGAGAGAAGAAATACTTTCTTGGGCTGCTGATTCTGGATTCACAATGAGAAGTTTGCTTGATGCAGCTTCAA

GGCTTCTCGACCCTGGTATGGAAAGCTCTGGATCTCTTTTTGTTGGGAGTTACATTTTGCAGCTTATTTTACATCTACCATTGCAAATGGCAATGCATAT

CCGAGATCTAGTTACTGCTCTTGTTAGACGAATGCAGTCAGCTCAAATAGTGGGGTTGAAAAGTTCATTATTGCTTATTTTTGCTAGATTGGTCCACATG

AGTGTTCCTCATGTTGAGCAATTTATTGATATGCTGATTGGTATACCAGCTGAAGGCTATGAAAACTCCTTTGTTTATGTGATGTCAGAATGGACTCAGA

AGCAAGGCGAGATTCAAGGGGCTTATCAAATTAAGGTCACAGCCAGTGCTTTGGCCTTGTTGCTATCCACTAGGCACGCTGAATTGAATAAAGTTAATGT

GCTAGGACATCTAAAGTCTGCTGCAGGAATTACCACTCGGTCAAAAGCTAAATTGGCCCCTGATCAGTGGACTTTAGTGCCTCTTCCTGTAAAGATATTG

GCTTTGCTGGCAGACACCGTGATTGAATTCCAAGAACAGGCAATGGCTGATGATGAGGAGAGCGACTGGGAAGAAATTCAAGGAGGGGTGGCAGAGTCTA

ATGATAGTTTGCTGTCCTCTGCTGCTGCTCCATCATTCGGCAGAACTACATATGGCCAACTTGAAGCAATGGCGAAAGCATATAATGAGAATGAAGAGGA

TTGGGATGATGATGATCTATTGAGTGTTTCCGATCAGCTCAATGGGATTAACTTGGTAAATTATCTTGCGGACTTCTTTGCAAAGTTCGTTCATAGCAAC

AGACAGCTATTTGATCATCTTTGCCAGAGTTTGGCACAGGCTCAACGTGATGCTATACAGACATTGCTACGATGCTGA

AA sequence

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>Potri.T108626.1 pacid=42766861 polypeptide=Potri.T108626.1.p locus=Potri.T108626 ID=Potri.T108626.1.v4.1 annot-version=v4.1

MANLIDQDQEWLLNCLNATLDPNQEIRSLAEVSLRQASLQPGFGVALSKVAANKELPFGLRQLAAVLLKQFIKTHWHESEESFEPPAVATEEKEVIRRLL

LPSLDDSHRKICTAISMAIASIAVYDWPENWPDLLPFLLKLINDRTNVSGVHGALRCLALLSGDLDDTVVPTLVPVLFPCLLTIVSSPQNYDNYLRTKAL

TIVYSCVSVLGIMSGVYKTEISALITPMLKPWMDQFSVILEPPMQPEDPDNWSLRMEVLKCLNQFVQNFPSLTESEFMVIVGPLWQTFVTSLSVYVRSSI

ECTEDPYGDRYDSDGAEKSLDAFVIQLFEFLLTIVGSAKLMKVVKNNIKELAYYTIAFLQMTEQQVHTWSRDANQFVADEDDATYSCRVSGVLLLEEVVN

SFGSEGIYAIIDAMRERFNESEREKAAGSAAWWRIRESILFALADLSDQLLDAEASGMISVNLGNLVEQIVTIDVGTGVHEYPFLYARIFTSVAKFSSVI

SHGVLEHFLHAAIKGVGMNVPPPVKMGACQALSQLLPEANKENIQPQLMGLFSSLTDLLHQASDETLHLVLETLQASIKAVREAAVSFESVVSPVVLNTW

ALYVSDPFLSIDAIEVLEALKNAPGGIHPLVSRILPHIGPILNKPYQQPDGLVAGSLDLVTMLLKNAPSDIIKAIYDTCFDAVIRIVLQSDDHSEMQNAT

QCLASFISGGREEILSWAADSGFTMRSLLDAASRLLDPGMESSGSLFVGSYILQLILHLPLQMAMHIRDLVTALVRRMQSAQIVGLKSSLLLIFARLVHM

SVPHVEQFIDMLIGIPAEGYENSFVYVMSEWTQKQGEIQGAYQIKVTASALALLLSTRHAELNKVNVLGHLKSAAGITTRSKAKLAPDQWTLVPLPVKIL

ALLADTVIEFQEQAMADDEESDWEEIQGGVAESNDSLLSSAAAPSFGRTTYGQLEAMAKAYNENEEDWDDDDLLSVSDQLNGINLVNYLADFFAKFVHSN

RQLFDHLCQSLAQAQRDAIQTLLRC

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T108626 [exp]	0	1

Potri.T108626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T108626 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T108626 coexpression network