Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G69040	722 / 0	ACR4	ACT domain repeat 4 (.1.2)
AT2G03730	632 / 0	ACR5	ACT domain repeat 5 (.1.2)
AT3G01990	518 / 0	ACR6	ACT domain repeat 6 (.1)
AT1G76990	459 / 6e-160	ACR3	ACT domain repeat 3 (.1.2.3.4.5)
AT1G12420	421 / 6e-145	ACR8	ACT domain repeat 8 (.1)
AT4G22780	410 / 9e-141	ACR7	ACT domain repeat 7 (.1)
AT5G25320	393 / 4e-133		ACT-like superfamily protein (.1)
AT5G65890	345 / 1e-114	ACR1	ACT domain repeat 1 (.1.2)
AT1G16880	54 / 6e-08	ACR11	ACT domain repeats 11, uridylyltransferase-related (.1.2)
AT2G36840	47 / 2e-05	ACR10	ACT domain repeats 10, ACT-like superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.008G109200 [exp]	919 / 0	AT1G69040	723 / 0.0	ACT domain repeat 4 (.1.2)
Potri.010G138600 [exp]	870 / 0	AT1G69040	743 / 0.0	ACT domain repeat 4 (.1.2)
Potri.001G327000 [exp]	569 / 0	AT3G01990	630 / 0.0	ACT domain repeat 6 (.1)
Potri.012G083000 [exp]	517 / 0	AT1G69040	493 / 3e-173	ACT domain repeat 4 (.1.2)
Potri.001G060100 [exp]	505 / 4e-178	AT1G69040	505 / 7e-178	ACT domain repeat 4 (.1.2)
Potri.015G100300 [exp]	504 / 8e-178	AT1G69040	483 / 3e-169	ACT domain repeat 4 (.1.2)
Potri.003G167800 [exp]	493 / 4e-173	AT1G69040	486 / 1e-170	ACT domain repeat 4 (.1.2)
Potri.012G102200 [exp]	488 / 2e-171	AT1G69040	473 / 5e-165	ACT domain repeat 4 (.1.2)
Potri.003G116600 [exp]	486 / 7e-171	AT1G12420	624 / 0.0	ACT domain repeat 8 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10036827 [exp]	746 / 0	AT1G69040	702 / 0.0	ACT domain repeat 4 (.1.2)
Lus10012550 [exp]	564 / 0	AT3G01990	612 / 0.0	ACT domain repeat 6 (.1)
Lus10041543 [exp]	556 / 0	AT3G01990	605 / 0.0	ACT domain repeat 6 (.1)
Lus10003136 [exp]	510 / 7e-180	AT1G69040	520 / 0.0	ACT domain repeat 4 (.1.2)
Lus10011329 [exp]	507 / 1e-178	AT1G69040	515 / 0.0	ACT domain repeat 4 (.1.2)
Lus10019191 [exp]	471 / 4e-167	AT1G69040	434 / 2e-152	ACT domain repeat 4 (.1.2)
Lus10028646 [exp]	467 / 5e-163	AT1G76990	699 / 0.0	ACT domain repeat 3 (.1.2.3.4.5)
Lus10018943 [exp]	467 / 4e-160	AT1G76990	686 / 0.0	ACT domain repeat 3 (.1.2.3.4.5)
Lus10011715 [exp]	387 / 7e-131	AT5G65890	520 / 0.0	ACT domain repeat 1 (.1.2)
Lus10006662 [exp]	364 / 2e-123	AT4G22780	483 / 4e-170	ACT domain repeat 7 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0070 [poplar] [flax]	ACT	PF13740 [poplar] [flax]	ACT_6	ACT domain

Representative CDS sequence

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>Potri.T124144.1 pacid=42766865 polypeptide=Potri.T124144.1.p locus=Potri.T124144 ID=Potri.T124144.1.v4.1 annot-version=v4.1

ATGAGCTTTTCAAATGATCTGGATGATGAATATGAGAAGCTCTTTAGGAGATTGAATCCACCGAGGGTTGTGATTGATAATGAAGCTTGCAAGAATGCTA

CTGTTATAAGGGTTGACAGTGCTAACAAACATGGAAAACTTCTTGAAGTTGTTCAAGTCCTCACTGATCTAAACCTTATCATAACCAAAGCTTACGTATC

CTCTGATGGTGGATGGTTCATGGATGTTTTTAATGTTACGGATCAAGATGGAAACAAGGTTACCGATGAAGCAATTCTAGATTATATTACAAAGTCGTTA

GGGACAGAATCTTGCTTTACATCTTCCATGGGATCTTTTGGGGTTAAACAATCTATAGATCACACTGCAATTGAGTTAACAGGAAGTGACAGACCAGGGC

TGCTATCTGAAGTGAGTGCTGTCCTCGCCCATTTAAAATGCAATGTATTGAATGCAGAGGTCTGGACACACAATATGCGGGCAGCAGCCGTGATGCAAGT

AACTGATGATGAAACCGGGTCAGCAATTACTGACCCAGAGAAGCTATCGAGGGTCAAGGAACTTCTTTGTAATGTACTGAAGGGCAGTAACAAATATAGG

GGAGCTAGGACTGTCGTGTCTCATGGGGTCACCCATACTGAGAGAAGGCTTCACCAAATGATGTTTGCTGATAGGGATTATGAACGAGCTAACAATGATG

TATTGGATGAGAAGCAAAGACCTAATGTGAGTGTGGTGAATTGGTATGAGAAGGACTACTCAGTGATAACTATAAGAAGTAAAGATAGACCAAAGCTTCT

CTTCGATACGGTTTGCACATTGACAGACATGGAGTATGTAGTTTTTCATGCTAATATAGATGCCGAGGGTCCAGAAGCTCATCAGGAATATTATATCAAG

CATGTTGATGGTTCCCCTGTAAAATCAGAGGCAGAGAGACAAAGAATTATACAATGTCTTGAAGCAGCTATTGAAAGAAGAGTATCTGAGGGCTTGAAGC

TAGAGTTATGCACTAAGGACAGAATTGGGCTGCTATCTGATGTTACTCGTATCTTTCGTGAAAATAGCCTTACTGTCACCAGAGCAGAAGTTACAACAAG

AGCAGGCAAAGCTGTTAATACATTTTATGTTAGTGATGCATCAGGGTATCCTGTTGATGCTAAAACCATAGATTCCATCCGGCAAGCAACTGGCCAGACC

ATACTGAAGGTGAAAGGCAGTCCTGAAGAGTTAAAACCGGTCTCTCAGGAATCACCCACAAGGTTTCTCTTTGGAGGTCTCTTCAAATCGAGATCTTTTG

TCAACTTTGGATTGGTTAAGTCGTATTCTTGA

AA sequence

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>Potri.T124144.1 pacid=42766865 polypeptide=Potri.T124144.1.p locus=Potri.T124144 ID=Potri.T124144.1.v4.1 annot-version=v4.1

MSFSNDLDDEYEKLFRRLNPPRVVIDNEACKNATVIRVDSANKHGKLLEVVQVLTDLNLIITKAYVSSDGGWFMDVFNVTDQDGNKVTDEAILDYITKSL

GTESCFTSSMGSFGVKQSIDHTAIELTGSDRPGLLSEVSAVLAHLKCNVLNAEVWTHNMRAAAVMQVTDDETGSAITDPEKLSRVKELLCNVLKGSNKYR

GARTVVSHGVTHTERRLHQMMFADRDYERANNDVLDEKQRPNVSVVNWYEKDYSVITIRSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYYIK

HVDGSPVKSEAERQRIIQCLEAAIERRVSEGLKLELCTKDRIGLLSDVTRIFRENSLTVTRAEVTTRAGKAVNTFYVSDASGYPVDAKTIDSIRQATGQT

ILKVKGSPEELKPVSQESPTRFLFGGLFKSRSFVNFGLVKSYS

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124144 [exp]	0	1

Potri.T124144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T124144 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T124144 coexpression network