Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34370 836 / 0 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G16090 816 / 0 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) AT3G27710 652 / 0 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT3G27720 485 / 2e-167 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT2G31770 226 / 2e-66 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 217 / 3e-63 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT1G05890 211 / 6e-61 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31780 206 / 4e-60 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT2G31510 207 / 2e-59 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G65430 191 / 2e-53 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G111200 [exp] 1148 / 0 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.007G126900 [exp] 217 / 5e-63 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.017G032000 [exp] 213 / 1e-61 AT2G31510 834 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.008G077100 [exp] 202 / 5e-57 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.010G180600 [exp] 201 / 5e-57 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 201 / 6e-57 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 182 / 5e-50 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.001G139400 [exp] 66 / 4e-11 AT1G32340 741 / 0.0 NDR1/HIN1-like 8 (.1) Potri.005G071500 [exp] 64 / 4e-10 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042348 [exp] 870 / 0 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026319 [exp] 837 / 0 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10040508 [exp] 762 / 0 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 748 / 0 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10026856 [exp] 202 / 3e-57 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 201 / 3e-57 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 193 / 7e-54 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 191 / 4e-53 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10020229 [exp] 179 / 3e-48 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10004569 [exp] 68 / 9e-12 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.T124304.1 pacid=42802266 polypeptide=Potri.T124304.1.p locus=Potri.T124304 ID=Potri.T124304.1.v4.1 annot-version=v4.1 ATGGAGGGTGAGGAGGATTATGGATTTAGTGAAGAGGAGGACTACTATTACGCCGATGATGGTGACTCGCATGACGGCCTTGCCGACAATGACGATTCTG CTTTACAGTGGGCTCCACCTAAGGGCTCAACTACTAAGGTGATCACTAAAGAGTCCCTCTTGGCTGCACAGAGGGAAGATTTGCGGAGAGTCATGGATTT GCTATCACTAAAAGAACACCATGCACGGACTTTATTGATCCATTATCGATGGGATGTTGAAAAGCTACTTGCAGTGCTTGTGGAGAAAGGGAAATCGTGT TTGTTTACTGAAGCAGGTGTTACTGTGGTTGAAAATGTTGATGATGAAGTGCCACCGAGTTCATCTTCTACAATAACTTGTGATATATGCATAGAGGATG CAACTGCTGATAACGCCACAAGAATGGAATGTGGCCATTGTTTCTGCAACAATTGCTGGACAGAACACTTCATTATAAAAATAAATGAGGGCCAGAGCAG GCGCATCCAGTGCATGGCACACAGATGTAGTGCAATTTGTGATGAAGCTATTGTCAGGAATTTAGTAAGTAGAAGGCATCCTAATTTGGCAGAGAAATTT GATCGCTTTCTTCTTGAGTCGTATATTGAGGACAATAAAATGGTCAAATGGTGTCCGAGCATTCCTCACTGCGGGAAAGCTATACGAGTTGAGGAGGATG AATTTTGCGAGGTAGAATGTTCATGTGGTCTGCAGTTTTGTTTCAGTTGCTTATCAGAAGCACACTCGCCTTGTTCATGCTTAATGTGGGAGCGCTGGAG CAAGAAGTGCCACGATGAATCTGAAACTGTTAACTGGATCACGGTTCATACAAAGCCTTGTCCAAAGTGCTACAAACCTGTCGAGAAAAATGGTGGCTGC AACCTTGTTAGCTGCATCTGTGGACAGTCATTTTGTTGGGTGTGTGGTGGAGCTACTGGTAGAGACCACACTTGGTCAAGAATAGCAGGTCACAGTTGTG GTCGCTACAAAGAAGACCGAGAGAAACAAACCGAAAGGGCAAAACGGGATCTCTATCGATATATGCATTATCATAACCGCTTCAAGGCTCATACAGATTC CTTTAAGCTTGAAAGTAAACTGAAGGAATCAATCCTAGACAAGGTGTCCGTTGCAGAAGAGAGGGAATTGAGACTCAAAGATTTCAGCTGGGTAACTAAT GGACTCAACAGACTTTTCAGATCAAGACGGGTTCTTTCTTATTCGTACCCGTTTGCATTTTACATGTTTGGTGAAGAGTTTTTTAAGGACGAGATGACAG ACGAGGAAAGGGAAATAAAAAAGAATCTATTTGAGGATCAGCAACAGCAGCTTGAGTCGAATGTTGAGAAACTCTCCATGTTTCTGGAGGAGCCCTTTCA GCAGTTCAGTCAGGATAAAGTTATGGATATAAGGATGCGCGTCATCAATCTGTCTGTGACCATTGATACCCTCTGTCAGAAAATGTATGAATGCATTGAG AGCGATTTGTTGGGTTCTCTTCATCTAGGCACCCATCATATAGCTCCTTACAAGTCGAAGGGCATTGAAAGGGCATCGGAACTTTCCTCTTGTTGGAACA CCAAACTTGGTTCTACAGATGAATACCTACCAAGTGGTGGGACATCAGAACATGACAGACCTTCTGGCTCTGGGAGTTCAGATGATAGTGGATGCTCTTA TCGGAAGCGTGCTAAAAAGGAGGGTGGTGGGTTTTTTGATCTGAACTTGCCAGCAGAGATTGTAGACAGGAACTGA
AA sequence Show only first row Show all	>Potri.T124304.1 pacid=42802266 polypeptide=Potri.T124304.1.p locus=Potri.T124304 ID=Potri.T124304.1.v4.1 annot-version=v4.1 MEGEEDYGFSEEEDYYYADDGDSHDGLADNDDSALQWAPPKGSTTKVITKESLLAAQREDLRRVMDLLSLKEHHARTLLIHYRWDVEKLLAVLVEKGKSC LFTEAGVTVVENVDDEVPPSSSSTITCDICIEDATADNATRMECGHCFCNNCWTEHFIIKINEGQSRRIQCMAHRCSAICDEAIVRNLVSRRHPNLAEKF DRFLLESYIEDNKMVKWCPSIPHCGKAIRVEEDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWERWSKKCHDESETVNWITVHTKPCPKCYKPVEKNGGC NLVSCICGQSFCWVCGGATGRDHTWSRIAGHSCGRYKEDREKQTERAKRDLYRYMHYHNRFKAHTDSFKLESKLKESILDKVSVAEERELRLKDFSWVTN GLNRLFRSRRVLSYSYPFAFYMFGEEFFKDEMTDEEREIKKNLFEDQQQQLESNVEKLSMFLEEPFQQFSQDKVMDIRMRVINLSVTIDTLCQKMYECIE SDLLGSLHLGTHHIAPYKSKGIERASELSSCWNTKLGSTDEYLPSGGTSEHDRPSGSGSSDDSGCSYRKRAKKEGGGFFDLNLPAEIVDRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124304 [exp]	0	1

Compare expression of checked genes

Potri.T124304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.