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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G20280	1384 / 0	SPSA1, ATSPS1F	sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
AT5G11110	1200 / 0	SPSA2, KNS2, ATSPS2F, SPS1	sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1)
AT1G04920	1000 / 0	ATSPS3F	sucrose phosphate synthase 3F (.1)
AT4G10120	928 / 0	ATSPS4F	Sucrose-phosphate synthase family protein (.1.2)
AT1G73370	138 / 5e-33	ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
AT5G49190	137 / 6e-33	ATSUS2, SSA, SUS2	SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1)
AT4G02280	127 / 1e-29	ATSUS3, SUS3	sucrose synthase 3 (.1)
AT5G20830	125 / 4e-29	ASUS1, ATSUS1, SUS1	sucrose synthase 1 (.1.2)
AT5G37180	123 / 2e-28	ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
AT3G43190	119 / 3e-27	ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G124677 [exp]	1765 / 0	AT5G20280	1601 / 0.0	sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Potri.006G064300 [exp]	1631 / 0	AT5G20280	1625 / 0.0	sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Potri.018G025100 [exp]	1319 / 0	AT5G20280	1472 / 0.0	sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Potri.017G057800 [exp]	1002 / 0	AT1G04920	1610 / 0.0	sucrose phosphate synthase 3F (.1)
Potri.001G317600 [exp]	1001 / 0	AT1G04920	1644 / 0.0	sucrose phosphate synthase 3F (.1)
Potri.013G095500 [exp]	942 / 0	AT4G10120	1513 / 0.0	Sucrose-phosphate synthase family protein (.1.2)
Potri.002G202300 [exp]	131 / 5e-31	AT4G02280	1439 / 0.0	sucrose synthase 3 (.1)
Potri.012G037200 [exp]	129 / 4e-30	AT1G73370	1284 / 0.0	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Potri.006G136700 [exp]	128 / 4e-30	AT3G43190	1375 / 0.0	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10038119 [exp]	1450 / 0	AT5G20280	1647 / 0.0	sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Lus10008056 [exp]	1411 / 0	AT5G11110	1384 / 0.0	sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1)
Lus10016657 [exp]	996 / 0	AT1G04920	1670 / 0.0	sucrose phosphate synthase 3F (.1)
Lus10041041 [exp]	865 / 0	AT4G10120	1412 / 0.0	Sucrose-phosphate synthase family protein (.1.2)
Lus10022570 [exp]	494 / 2e-164	AT1G04920	717 / 0.0	sucrose phosphate synthase 3F (.1)
Lus10006186 [exp]	228 / 9e-68	AT4G10120	303 / 8e-96	Sucrose-phosphate synthase family protein (.1.2)
Lus10006184 [exp]	160 / 2e-45	AT4G10120	208 / 4e-63	Sucrose-phosphate synthase family protein (.1.2)
Lus10001468 [exp]	132 / 6e-31	AT4G02280	1385 / 0.0	sucrose synthase 3 (.1)
Lus10020506 [exp]	129 / 2e-30	AT3G43190	1420 / 0.0	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
Lus10007372 [exp]	126 / 2e-29	AT1G73370	1195 / 0.0	ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0113 [poplar] [flax]	GT-B	PF00534 [poplar] [flax]	Glycos_transf_1	Glycosyl transferases group 1
CL0137 [poplar] [flax]	HAD	PF05116 [poplar] [flax]	S6PP	Sucrose-6F-phosphate phosphohydrolase

Representative CDS sequence

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>Potri.T124307.1 pacid=42776685 polypeptide=Potri.T124307.1.p locus=Potri.T124307 ID=Potri.T124307.1.v4.1 annot-version=v4.1

ATGACAAAAAATCTTCTCTTTTGCTTAGAGAAAGAGGCAGGTTTAGCCCAACTCGTTACTTTGTTGAAGAAGTTGTTTCTGGATTTGATGAGACCGATCT

TTATCGCTCCTGGGTTCGAGCTCAGGCGACGAGGAGTCCTCAAGAGAGGAATACGAGGTTGGAGAATATGTGCTGGAGGATTTGGAACTTGGCTCGGCAA

AAGAAACAGCTTGAGGGAGATCTGGCCCAAAGAAATGCTAAACGTCGTCTTGAGCGTGAAAGAGGACGCAGAGAAGCAGTGGCTGATATGTCTGAAGACT

TATCAGAGGGAGAGAAAGGAGATACAGTTGGAGATCTATCAGCCCACGGTGATAGCGTCCGGGGCAGGACTGCCTAGAATCAATTCTGTTGATGCAATGG

AGGCTTGGGTTAATCAGCAGAAAGGAAAAAAACTATACATTATATTAATAAGCCTTCATGGTCTATTACGAGGTGATAACATGGAGCTTGGCCGCGATTC

TGATACTGGTGGTCAGGTTAAATATGTAGTGGAACTTGCAAGGGCTTTGGCCTCAATGCCAGGAGTGTATCGAGTTGATTTGTTAACTAGACAAGTATCA

GCTCCGGATGTAGATTGGAGCTATGGTGAACCCACAGAGATGTTGAATATAAGAAATGAAGATTTCTTGGATGAGATGGGAGAGAGCAGCGGCGCTTATA

TTGTCCGCATACCTTTTGGACCGAAGGATAAATATATACCGAAGGAACTTCTGTGGCCTCACATCCCTGAGTTTGTAGATGGCGCACTTAACCACATAAT

TCGGATGTCCAAAAGCCTAGGAGAGCAAATTGGTGGGGGGAAGCCTGTCTGGCCTGTTGCCATCCATGGGCACTATGCTGATGCAGGCGATTCTGCTGCT

CTTCTATCTGGTGCTTTAAATGTCCCCATGCTTTTTACTGGTCACTCACTTGGTCGGGATAAATTAGAGCAGCTACTTAAACAAGGCCGTCTCTCGAGGG

ACGAGATCAACTCAACATACAAGATAATGCGTCGGATAGAGGCAGAGGAGTTATCACTTGATGTTTCAGAGATAGTCATAACTAGCACTAGACAAGAGAT

AGAGGAGCAATGGCGCTTGTATGATGGTTTTGATCCTATACTTGAGCGTAAACTGCGAGCAAGAATCAGGCGTAACGTGAGTTGTTACGGAAGGTTCATG

CCCCGCATGGCTATAATTCCTCCTGGAATGGAGTTTCATCACATTGTTCCCCAGGATGGTGATATGGATGGCGAAATAGAAGGAAATGAAGACCATCCCT

CTTCTCATCCATCGATATGGATAGAGATCATGCGCTTCTTTACCAATTCTCACAAGCCTATGATACTTGCCCTTGCAAGACCAGATCCCAAAAAGAACAT

CACAACTTTGGTCAAAGCATTTGGAGAATGTCGGCCATTGAGAGAGCTTGCTAACCTTACTCTAATTATGGGCAATCGAGATGGAATAGATGAAATGTCC

AGCACAAGTGCTTCTGTCCTTCTTTCTGTGCTTAAGCTTATTGACAAGTATGATCTGTATGGGCAAGTCGCATACCCTAAACATCACAAGCAGTCTGATG

TTCCTGACATTTATCGACTAGCAGCAAAGACAAAGGGTGTTTTCATCAATCCGGCTTTCATTGAGCCATTTGGACTTACTTTAATTGAGGCAGCAGCTCA

TGGATTGCCTATGGTTGCCACCAAAAATGGAGGCCCAGTAGACATACACCGGGTACTTGACAATGGTCTCCTTGTTGATCCTCATGATCAGCAGTCCATT

GCTGATGCTCTTCTAAAGCTTGTTGCTGAAAAGCATCTTTGGGCAAAATGCCGTCAGAATGGTTTGAAGAACATTCACCATTTTTCATGGCCAGAGCATT

GCAAGGCTTATCTTTCCAAAATAGCCGGTTGCAAACCAAGGCATCCACAATGGCAAAAAAGTGATGATGGAGCTGATACTTCCGACACAGATTCTCCTGG

TGATTCCTTGAGAGATATACAGGATTTATCTTTGAACTTAAGGTTCTCATTGGATGGGGAAAAGACTGGAGGTAGTGGAAATGATAGTTCTCTAGGATCT

GAAGGAAATGCTGCTGATAAGAAGAGTAAAATAGAGAATGCTGTATTGGCATGGTCCAAGGGTGTTGTAAAGGACACACGAAAGGCTGTTGACCATAACA

GCAGTTCTGGTAAGTTTCCATCATTGAGAAGGAGGAAACAAATCTTTGTTGTTGCAGTGGACTTTGATAATTTTGCCAGTCTTGCTGAAGCCACCAGAAA

AATTTTTGAGGCTGTTGAAAAGGAACGGGTGGAAGGTTCTATAGGGTTTATATTGTCAACGTCCTTGGCCATATCTGAGATATGCTCCTTTCTGGCCTCA

GGGGGGTTTAGCCCCAGTGATTTTGATGCTTTTATTTGCAACAGTGGTAGTGACCTCTACTATTCAACTCCCAATCCAGAGGATGGTCCCTTTGTCATTG

ACTTTTATTATCACTCACACATTGAATACCGTTGGGGTGGAGAAGGGCTGAGGAAGACTCTGTTTCGCTGGTCATCTTCAGTTATTGATAAGAAGGCTGA

GGATGCGGAACGGATTGTATCTTCAGCCGAACAACTTTCTACTGACTATTGTTATGCTTTTACAGTGAAAAAGCCAGGATCGGTTCCACCAGTTAAGGAG

CTCCAAAAGGTTCTGAGAATTCAGGCTCTCCGTTGCCATGCTATTTATTGCCAAAATGGGACCAGGATAAATGTAATTCCAGTATTGGCTTCCCGTTCCC

AAGCCCTCAGGTACCTATATGTTCGATGGGGAGTGGAATTGGCAAGTATGGTCGTTTTTGTTGGAGAATGTGGTGACACAGATTATGAAGGATTGCTTGG

TGGGCTGCACAAAAGTGTAATATTGAAAGGAGTCTGTAGCAGTGCAAGCAGCCAAATCCATTCGAACCGAAGCTACCCTCTCTCAGACATCATGCCATTA

GAGAGCCCAAATGTTGTTCAAGCAGCCGAAGAAAGCTCTGCTATCAGGAGTTCCTTGGAACAATTAGGATGTCTCAAGAGTTAA

AA sequence

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>Potri.T124307.1 pacid=42776685 polypeptide=Potri.T124307.1.p locus=Potri.T124307 ID=Potri.T124307.1.v4.1 annot-version=v4.1

MTKNLLFCLEKEAGLAQLVTLLKKLFLDLMRPIFIAPGFELRRRGVLKRGIRGWRICAGGFGTWLGKRNSLREIWPKEMLNVVLSVKEDAEKQWLICLKT

YQRERKEIQLEIYQPTVIASGAGLPRINSVDAMEAWVNQQKGKKLYIILISLHGLLRGDNMELGRDSDTGGQVKYVVELARALASMPGVYRVDLLTRQVS

APDVDWSYGEPTEMLNIRNEDFLDEMGESSGAYIVRIPFGPKDKYIPKELLWPHIPEFVDGALNHIIRMSKSLGEQIGGGKPVWPVAIHGHYADAGDSAA

LLSGALNVPMLFTGHSLGRDKLEQLLKQGRLSRDEINSTYKIMRRIEAEELSLDVSEIVITSTRQEIEEQWRLYDGFDPILERKLRARIRRNVSCYGRFM

PRMAIIPPGMEFHHIVPQDGDMDGEIEGNEDHPSSHPSIWIEIMRFFTNSHKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMS

STSASVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSI

ADALLKLVAEKHLWAKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDDGADTSDTDSPGDSLRDIQDLSLNLRFSLDGEKTGGSGNDSSLGS

EGNAADKKSKIENAVLAWSKGVVKDTRKAVDHNSSSGKFPSLRRRKQIFVVAVDFDNFASLAEATRKIFEAVEKERVEGSIGFILSTSLAISEICSFLAS

GGFSPSDFDAFICNSGSDLYYSTPNPEDGPFVIDFYYHSHIEYRWGGEGLRKTLFRWSSSVIDKKAEDAERIVSSAEQLSTDYCYAFTVKKPGSVPPVKE

LQKVLRIQALRCHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHKSVILKGVCSSASSQIHSNRSYPLSDIMPL

ESPNVVQAAEESSAIRSSLEQLGCLKS

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124307 [exp]	0	1

Potri.T124307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T124307 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T124307 coexpression network