Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 454 / 4e-149 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 424 / 4e-136 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 359 / 3e-111 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 356 / 2e-110 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 283 / 6e-84 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 262 / 4e-76 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 245 / 4e-70 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 243 / 5e-69 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 241 / 9e-69 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07280 241 / 2e-68 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080800 [exp] 901 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 803 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G164800 [exp] 448 / 2e-145 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 429 / 5e-138 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 346 / 3e-106 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 343 / 3e-105 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 337 / 2e-103 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 331 / 3e-101 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 247 / 4e-71 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032954 [exp] 448 / 3e-145 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011756 [exp] 359 / 3e-111 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10018911 [exp] 353 / 1e-109 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 352 / 6e-109 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023677 [exp] 347 / 5e-107 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 269 / 1e-78 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 257 / 3e-74 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10008712 [exp] 248 / 4e-71 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 241 / 3e-69 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012193 [exp] 239 / 1e-68 AT2G41820 1232 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.T124308.1 pacid=42762252 polypeptide=Potri.T124308.1.p locus=Potri.T124308 ID=Potri.T124308.1.v4.1 annot-version=v4.1 ATGAAACCATGTGGATGGTTTGGAATCACTTGCAATCTCAACAATGAAGTTGTATCGTTGGAGTTTAGGTATGTTGATTTGTTTGGAAAACTACCCTCCA ATTTTACCTCACTGTTTTCCTTAAACAAGCTTATTCTGTCTGGAACCAATCTCACTGGTTCAATCCCAAAAGAGATTGGCACTGCTCTTCCTCGGTTGAC TCACTTAGACTTGAGTGACAATGCCTTAACCGGCGAAATCCCAAGTGAGCTTTGTGTCTTGATCACGCTTGAAGAACTCCTTCTCAACTCAAATCAACTT GAGGGCTCCATTCCAATCGAAATCGGAAACCTCACTAGCTTGAAAAGGTTAATCCTCTACGACAATCAACTTAGTGGTTCCATGCCTAACACCATAGGCA AGTTGAGGTATCTCGAAGTGATTAGAGCTGGTGGCAACAAGAATCTCGAAGGCTCGTTACCTCAAGAAATTGGCAACTGCAGCAACTTGTTGATACTAGG CCTAGCAGAGACGAGCATCTCAGAACTTGGTGATTGCACCGAGCTCCAGGACATATACCTTTATGAAAACTCACTCACTGGATCAATCCCGAAAACATTA GGCCAACTCCAAAACCTTAAAAACCTCTTGCTCTGGCAAAACAACTTGGTTGGTGTCATCCCTCCAGAGCTCGGAAACTGCAACCAAATGTTGGTCATTG ACATATCAATGAATTCCTTAACCGGAAGCATTCCTCAATCATTTGGCAATCTAACTGAACTTCAAGAATTCCAGCTTAGCCTCAATCAAATCTCCGGAGT AATCCCTGCGCAACTTGGAAATTGCCGGAAGCTCACTCACATCGAACTCGACAACAATCAAATCAGTGGCTCAATCCCACCTGAAATAGAAACTCAACAA GCTCTTGCTCTTTCCAACAATCTCTCTGGTGAAATACCACCCGAGATTGGAAACTGCTCGTCTTTGATTCGTTTTCGAGCTAATAACAACAAGGTTGCCG GAACAATTCCACCCCAGATTGGAAATTTGAAGAATTTGAACTTCTTGGATCTCGGATCGAACCGGATTGCCGGAGACATCCCGGAAGAAATCTCGGGTTG TCAGAATCTCACATTTTTGGATTTGCATTCAAATGCTATATCTGGGAACTTGCCACAGAGTTTTAACAAGCTTGTTTCTCCAAACAAGCTCTCAGGTTCC ATTCCGAATCAACTCGGTTCCTGCTCCAAGTTACAGTTGTTGGACCTGAGTGGAAATCAGTTATCAGGGAACATTCCGTCGAGTGTTGGAAAGATTCCGT CACTGGAAATCGCTCTGAATCTCAGCTTGAATCAACTTAACGGAGAGATTCCGTCAGATGTTCTTACCGGTAATCCCGCTCTTTGCTTCTCCGATAGCCA GTGTGATGGCGATGACAAGCGCGTGAAGCGAGGGACGGCAGCACGTGGGCAATGGTGGTGCTGTTGTGCACGGCGTGTGTCTCTTTTGGCAGCGCTCTAC AATATCCTACGAAGCAAAAAGCATGGCCGTGGGGCCCAAGAGTGCGATCGTGATGATGACTTGGAGATGAGGCCGCCTTGGGAAGTGACTTTATACCAGA AACTAGACTTGTCAATTGCTGATGTGGCACGATCGCTGACAGCTGGCAATGTGATCGGGCGAGGACGGTCCGGGGTGGTGTATAAGGTTGCCATCCCGTC AGGGCTGATGGTGGCAGTTAAGAGGTTTAAGTCAGCAGAGAAGATTCAGCAGCATCATTTTCATCCGAGATTGCTACGTTGGCGATAA
AA sequence Show only first row Show all	>Potri.T124308.1 pacid=42762252 polypeptide=Potri.T124308.1.p locus=Potri.T124308 ID=Potri.T124308.1.v4.1 annot-version=v4.1 MKPCGWFGITCNLNNEVVSLEFRYVDLFGKLPSNFTSLFSLNKLILSGTNLTGSIPKEIGTALPRLTHLDLSDNALTGEIPSELCVLITLEELLLNSNQL EGSIPIEIGNLTSLKRLILYDNQLSGSMPNTIGKLRYLEVIRAGGNKNLEGSLPQEIGNCSNLLILGLAETSISELGDCTELQDIYLYENSLTGSIPKTL GQLQNLKNLLLWQNNLVGVIPPELGNCNQMLVIDISMNSLTGSIPQSFGNLTELQEFQLSLNQISGVIPAQLGNCRKLTHIELDNNQISGSIPPEIETQQ ALALSNNLSGEIPPEIGNCSSLIRFRANNNKVAGTIPPQIGNLKNLNFLDLGSNRIAGDIPEEISGCQNLTFLDLHSNAISGNLPQSFNKLVSPNKLSGS IPNQLGSCSKLQLLDLSGNQLSGNIPSSVGKIPSLEIALNLSLNQLNGEIPSDVLTGNPALCFSDSQCDGDDKRVKRGTAARGQWWCCCARRVSLLAALY NILRSKKHGRGAQECDRDDDLEMRPPWEVTLYQKLDLSIADVARSLTAGNVIGRGRSGVVYKVAIPSGLMVAVKRFKSAEKIQQHHFHPRLLRWR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124308 [exp]	0	1

Compare expression of checked genes

Potri.T124308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.