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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G20270	385 / 2e-133	HHP1	heptahelical transmembrane protein1 (.1)
AT4G30850	291 / 3e-96	HHP2	heptahelical transmembrane protein2 (.1.2)
AT4G37680	279 / 3e-91	HHP4	heptahelical protein 4 (.1.2)
AT2G24150	277 / 4e-91	HHP3	heptahelical protein 3 (.1)
AT4G38320	265 / 5e-86	HHP5	heptahelical protein 5 (.1)
AT2G40710	98 / 4e-25		Haemolysin-III related integral membrane protein (.1)
AT4G38290	86 / 2e-20		Haemolysin-III related integral membrane protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G124754 [exp]	756 / 0	AT5G20270	384 / 4e-133	heptahelical transmembrane protein1 (.1)
Potri.006G064400 [exp]	583 / 0	AT5G20270	369 / 2e-127	heptahelical transmembrane protein1 (.1)
Potri.018G102400 [exp]	308 / 9e-103	AT4G30850	374 / 5e-129	heptahelical transmembrane protein2 (.1.2)
Potri.014G006000 [exp]	291 / 1e-95	AT4G37680	632 / 0.0	heptahelical protein 4 (.1.2)
Potri.007G005800 [exp]	290 / 3e-95	AT4G37680	611 / 0.0	heptahelical protein 4 (.1.2)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10008057 [exp]	481 / 2e-170	AT5G20270	394 / 6e-137	heptahelical transmembrane protein1 (.1)
Lus10038120 [exp]	439 / 6e-155	AT5G20270	377 / 3e-131	heptahelical transmembrane protein1 (.1)
Lus10011713 [exp]	270 / 3e-87	AT4G37680	585 / 0.0	heptahelical protein 4 (.1.2)
Lus10025206 [exp]	269 / 5e-87	AT4G37680	584 / 0.0	heptahelical protein 4 (.1.2)
Lus10010605 [exp]	266 / 3e-86	AT4G37680	464 / 7e-164	heptahelical protein 4 (.1.2)
Lus10036605 [exp]	191 / 2e-57	AT4G30850	259 / 3e-84	heptahelical transmembrane protein2 (.1.2)
Lus10035823 [exp]	97 / 2e-21	AT4G30920	776 / 0.0	leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10007709 [exp]	0 / 1	ND	47 / 2e-10

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0192 [poplar] [flax]	GPCR_A	PF03006 [poplar] [flax]	HlyIII	Haemolysin-III related

Representative CDS sequence

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>Potri.T124407.1 pacid=42776689 polypeptide=Potri.T124407.1.p locus=Potri.T124407 ID=Potri.T124407.1.v4.1 annot-version=v4.1

ATGAGTGGGTTGAGGGTCTTGAAGAGGAAAGGGAGGGAAAATATGGATCAAACCCAGAAGAAAGAAGCTGCAGTAGTGCTTGATTCTTGCAAAAGCAGTG

GAGCAATCAAGAAGATGAAGAAAGATGATGAGAGTCAAAGCAAAGGTAAGAAAACGTGTGATTTAGTGTCGTTTTGGGAGCTGCCAGAGTACATGAAGGA

CAATGAGTTCATCTTGAGTTACTACAGAGCAGATTGGCCTCTCAAAAAAGCTCTCTTTAGCGTTTTTCGTTGGCATAATGAAACTCTCAATGTCTGGACG

CACCTTCTTGGTTTCTTCTTGTTTGTGGGGTTGACTGTGGCAAATTTAATGCAAGTGCCTCAGGTTGCTGATCTACTTGGCTTGTTTACCTGGTCAATTA

TTACTAGTGCACAAAGAAATGTTTCTAATGATTCAAAGGATTTCTACTTGGGGACAACAGAACTGCTTGATCTGGGCCACAATTTACCTATGAAAACGGA

TGTTTCATCATTAGGAATGCCTGCAACCCGGTGGCCATTCTATGTATTCTTAGGTGGCTCTATGTTCTGCCTCCTGTCAAGTAGCGTTTGCCACCTCTTT

TCTTGTCATTCACACAGCTTGAACATTCTGTTGCTGCGAATGGACTATGTCGGCATTGTTATAATGATCATCACCTCTTTTTTTCCTCCAATGTATTATA

TCTTCCAATGTGAACCACATTGGCAATTTATCTACCTTGGTGGTATCACAGTAATGGGAATGTTCACTATCGTGACACTACTTTCTCCACCGCTATCTAC

CGGAAAATTTCGTGCTTTTAGAGCCATGCTGTTCGCTTCCATGGGATTATTCGGCCTTATCCCTGCAGTACATTCTGTAATTGCCAATTGGAGCAATCCC

AAGCGTGATACCATTGTAGCTTATGAGTTTGCCATGGCTATATTTTACTTGACTGGAACCGGGTTGTATGTAAGTAGGTTTCCAGAGAGGTTGAAGCCTG

GACTGTTCGACCTAACAGGACACAGTCATCAGATTTTTCATGTTTTTGTGGTATTGGGAGCATTGGCTCATTATGGTGCCACACTTTTATTCTTGGAGTA

TCGTGATCTTGTGGGATGTGAAGTAAACCTATAA

AA sequence

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>Potri.T124407.1 pacid=42776689 polypeptide=Potri.T124407.1.p locus=Potri.T124407 ID=Potri.T124407.1.v4.1 annot-version=v4.1

MSGLRVLKRKGRENMDQTQKKEAAVVLDSCKSSGAIKKMKKDDESQSKGKKTCDLVSFWELPEYMKDNEFILSYYRADWPLKKALFSVFRWHNETLNVWT

HLLGFFLFVGLTVANLMQVPQVADLLGLFTWSIITSAQRNVSNDSKDFYLGTTELLDLGHNLPMKTDVSSLGMPATRWPFYVFLGGSMFCLLSSSVCHLF

SCHSHSLNILLLRMDYVGIVIMIITSFFPPMYYIFQCEPHWQFIYLGGITVMGMFTIVTLLSPPLSTGKFRAFRAMLFASMGLFGLIPAVHSVIANWSNP

KRDTIVAYEFAMAIFYLTGTGLYVSRFPERLKPGLFDLTGHSHQIFHVFVVLGALAHYGATLLFLEYRDLVGCEVNL

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124407 [exp]	0	1

Potri.T124407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T124407 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T124407 coexpression network