Plant FIBer expression Database

Potri.T124504 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19270 182 / 2e-53 DA1 DA1 (.1)
AT4G36860 180 / 2e-52 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
AT2G39830 169 / 2e-48 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
AT5G66620 154 / 4e-42 DAR6 DA1-related protein 6 (.1)
AT5G66610 149 / 7e-41 DAR7 DA1-related protein 7 (.1.2)
AT5G66630 146 / 3e-39 DAR5 DA1-related protein 5 (.1)
AT5G66640 138 / 3e-37 DAR3 DA1-related protein 3 (.1.2)
AT5G17890 141 / 4e-37 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G111446
[exp]
238 / 7e-80 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Potri.002G132700
[exp]
186 / 3e-55 AT1G19270 669 / 0.0 DA1 (.1)
Potri.007G032500
[exp]
187 / 4e-55 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Potri.014G039900
[exp]
185 / 1e-54 AT1G19270 654 / 0.0 DA1 (.1)
Potri.005G128900
[exp]
181 / 4e-53 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Potri.010G197500
[exp]
179 / 4e-52 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Potri.005G128800
[exp]
176 / 8e-51 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022486
[exp]
186 / 6e-55 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Lus10016791
[exp]
187 / 9e-55 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Lus10010033
[exp]
182 / 1e-53 AT1G19270 657 / 0.0 DA1 (.1)
Lus10016298
[exp]
179 / 2e-52 AT1G19270 646 / 0.0 DA1 (.1)
Lus10032736
[exp]
179 / 4e-52 AT1G19270 628 / 0.0 DA1 (.1)
Lus10040258
[exp]
167 / 2e-46 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Lus10018789
[exp]
154 / 7e-43 AT1G19270 575 / 0.0 DA1 (.1)
Lus10004690
[exp]
118 / 1e-29 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
Lus10000138
[exp]
78 / 5e-17 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0126 Peptidase_MA PF12315 DA1-like Protein DA1
Representative CDS sequence
>Potri.T124504.1 pacid=42802273 polypeptide=Potri.T124504.1.p locus=Potri.T124504 ID=Potri.T124504.1.v4.1 annot-version=v4.1
ATGTGTCAATTGCTACCACCACCAAAGAGGTATCCCAAAGAAGATCCACCACCAGGAGCAGCATGGACCTTGGTTGAAGGTCGATCCGTGATGAACAATC
TGTTTTCTGAACAGATCCGAGGCCCGCACCTAAAACGTGAGTTCTGGAACCAAGTTTATTGTTATGATCACACGAGGGATGGCACTCATATATGCTGCTC
CTGCAGGCGATTCGAGCCAAGAAATGAAAAATTCGTTAGCCTTGGTGATGATCGAAGGGATGGTAGAAGAATATGCAACGACTGTTTTTCCACGGCTATC
TTGGAGACACAAGGAATCGAACCACTTGTACGCTATGTGCTAAGATTCTTCGATCATTTGAATATGAAAATAAAGGCACCTATCCCTGTCTTCTCGGTTG
ATAGAGGGGAGATGAGGAGACAAACAGCAGGAGGAACTGCTCCTGTTCATCCAGACACCACGGTACTTGGACTCACTATGTGCTCATACAGGGACATCAC
TAGCGTTGACAAGTCTCGGTTGCAAGGGAGAAAAATTGTTACAGAAATGGAGACTTACCGTTTCGGCCATGAATACAGAATAAAGATACTAGTTTTATTT
GGCCTGCCCCTGGTCATGACCGGAGGGATATTAGCTCATGAGTTTATGCACGCATGGCTGAGGCTTCAAGGCGTGTCACGCTTGAACCCAGAAATCGAAG
AAGGTATATGCCAGGTGATGGGTTACCAATGGCTGGATTGGTTCGAAGCGGTAGATCCAGAGGCATCGTCTAGCAGAAGTGAGAAGGCTCAGTTCATGAG
GAACTTGAAGAAAACTTTCAAGGGTGAAGTAGAAAACATGTTGGACGGAGCTTATGGTGATGGATTCAGAGATGCTCAATGGGCGGTCTCGAGATATGGC
CTTGACCATGTCATCAGGCACATTATCCGCCATAAAACTCTTCCGAGAGAGTGA
AA sequence
>Potri.T124504.1 pacid=42802273 polypeptide=Potri.T124504.1.p locus=Potri.T124504 ID=Potri.T124504.1.v4.1 annot-version=v4.1
MCQLLPPPKRYPKEDPPPGAAWTLVEGRSVMNNLFSEQIRGPHLKREFWNQVYCYDHTRDGTHICCSCRRFEPRNEKFVSLGDDRRDGRRICNDCFSTAI
LETQGIEPLVRYVLRFFDHLNMKIKAPIPVFSVDRGEMRRQTAGGTAPVHPDTTVLGLTMCSYRDITSVDKSRLQGRKIVTEMETYRFGHEYRIKILVLF
GLPLVMTGGILAHEFMHAWLRLQGVSRLNPEIEEGICQVMGYQWLDWFEAVDPEASSSRSEKAQFMRNLKKTFKGEVENMLDGAYGDGFRDAQWAVSRYG
LDHVIRHIIRHKTLPRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T124504
[exp]
0 1

Potri.T124504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.