Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42180 525 / 0 Exostosin family protein (.1.3) AT5G33290 513 / 5e-180 XGD1 xylogalacturonan deficient 1 (.1) AT5G20260 508 / 1e-178 Exostosin family protein (.1) AT5G11130 499 / 1e-174 Exostosin family protein (.1) AT5G03795 430 / 4e-147 Exostosin family protein (.1) AT5G25310 400 / 6e-136 Exostosin family protein (.1) AT3G07620 397 / 1e-134 Exostosin family protein (.1) AT4G16745 301 / 1e-96 Exostosin family protein (.1.2) AT5G25820 296 / 1e-93 Exostosin family protein (.1) AT5G19670 290 / 2e-91 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124832 [exp] 921 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064600 [exp] 559 / 0 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 544 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 543 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 538 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 538 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 522 / 0 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 520 / 0 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 520 / 0 AT5G20260 530 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005186 [exp] 556 / 0 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 544 / 0 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10027707 [exp] 531 / 0 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 430 / 2e-146 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 422 / 4e-143 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 409 / 2e-139 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10008751 [exp] 404 / 7e-137 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 387 / 2e-130 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10016058 [exp] 367 / 5e-125 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001958 [exp] 297 / 3e-98 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.T124507.1 pacid=42776690 polypeptide=Potri.T124507.1.p locus=Potri.T124507 ID=Potri.T124507.1.v4.1 annot-version=v4.1 ATGGCAGTCTTTAACTTGGACAAATTATGCTTAATACTTCCAGCTTTTCTTTTTCTCCTCCTTCTCTTTCCCTTGGGTGGTCAGCACCATCTCACCCTAC TCTTCTCTTCTTTCAATCCCATTAAAGCCAACAGCTCAACAACACCACTAGAAGCACCAGTACTGGATGCATTTGCTTCAACCTCCATTAATACAAGCAA TGAAGATGAGCCCAAGACTCAAAAAAAAAGGAGTAGCCTGGAGAGAGTAGAAGAGGGTTTATCTAAGGCTCGTGCAGCTATTCAAGAAGCTATTCGTTCG AAGAACTACACATCACACAAGAAAGAGACCTTCATCCCCAAAGGATCAGTATACTGGAACTCCCATGCTTTTCATCAGAGCCATATAGAGATGGTGAAGA GATTCAAGGTGTGGCCCTACAAGGAAGGAGAGAGGCCATTGGTCCATGATGGCCCTTTAAACAACATCTATTCCATTGAGGGCCATTTCATCGATGAGGT CGAAAGCAAGGGGAGCCCATTCAGGGCCCAAGATCCCGATGAGGCCCATGTATTCTTCCTCCCCGTTAGTGTAGCTTCTATTGTGCACTTCATCTACTTG CCGATCACGGCGGCGGCGGATTACTCTCGTGATCGCCTCCGCCGGGTTGTGACGGATTACGTTCACATTGTTGCCAAGAAGTATCCTTACTGGAATAGAA GTAACGGTGCTGATCATTTTATGGTTTCATGTCATGATTGGGCACCTGATGTATCAATCGCCAATTCTGAGCTCTTCAACAAATTCATTAGAGTCCTCTG CAATGCCAACATCTCTACAGGGTTCCGGCCACCAAGAGATGTCCTTTTACCGGAGATTTACCTTCCCTTTTCAGGCCTTGGTACAACCCATATGGGGCAG GCTCCAAACAACCGCCCAATTCTAGCATTTTTTGAAGGTAGGGCTCATGGGTATATCAGGCAGGTCTTATTCAAGCATTGGAAGAACAAAGATAACGAAG TTCAAGTCCATGAGCTGCTTCCAAAGGGCAAGAATTACACAAGACTAATGGGTCAAAGCAAGTTTTGCTTGTGCCCTAGTGGATTTGAAGTGGCAAGCCC TAGAGTCGTGGAAGCAATTTATCAAGGATGTGTGCCTGTGATCATTTCTAACAACTATTCATTACCGTTTAGTGATGTCCTTAATTGGAGTCAATTCTCA GTACAGATCCCAGTTGAGAAGATACCAGAAATCAAGATGATCCTGCAAAGAATTTCTAACAGCAAGTACTTGAGAATGCATGAAAGAGTCAAGAGAGTTC AGAGGCATTTTGTGCTCAACCGACCAGCTAAACCATTTGATGTTATCCACATGGTGCTTCACTCGTTGTGGCTTCGGAGGTTGAATTTTAGGTTGTCAGA CTGA
AA sequence Show only first row Show all	>Potri.T124507.1 pacid=42776690 polypeptide=Potri.T124507.1.p locus=Potri.T124507 ID=Potri.T124507.1.v4.1 annot-version=v4.1 MAVFNLDKLCLILPAFLFLLLLFPLGGQHHLTLLFSSFNPIKANSSTTPLEAPVLDAFASTSINTSNEDEPKTQKKRSSLERVEEGLSKARAAIQEAIRS KNYTSHKKETFIPKGSVYWNSHAFHQSHIEMVKRFKVWPYKEGERPLVHDGPLNNIYSIEGHFIDEVESKGSPFRAQDPDEAHVFFLPVSVASIVHFIYL PITAAADYSRDRLRRVVTDYVHIVAKKYPYWNRSNGADHFMVSCHDWAPDVSIANSELFNKFIRVLCNANISTGFRPPRDVLLPEIYLPFSGLGTTHMGQ APNNRPILAFFEGRAHGYIRQVLFKHWKNKDNEVQVHELLPKGKNYTRLMGQSKFCLCPSGFEVASPRVVEAIYQGCVPVIISNNYSLPFSDVLNWSQFS VQIPVEKIPEIKMILQRISNSKYLRMHERVKRVQRHFVLNRPAKPFDVIHMVLHSLWLRRLNFRLSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124507 [exp]	0	1

Compare expression of checked genes

Potri.T124507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.