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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G12940	683 / 0	ATNRT2.5	nitrate transporter2.5 (.1)
AT1G08090	549 / 0	LIN1, ACH1, NRT2;1AT, ATNRT2:1	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
AT5G60770	548 / 0	ATNRT2.4	ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
AT3G45060	540 / 0	ATNRT2.6	ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, high affinity nitrate transporter 2.6 (.1)
AT1G08100	538 / 0	NRT2;2AT, ACH2, ATNRT2.2	nitrate transporter 2.2 (.1)
AT5G60780	531 / 0	ATNRT2.3	ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.3, nitrate transporter 2.3 (.1)
AT5G14570	458 / 7e-158	ATNRT2.7	high affinity nitrate transporter 2.7 (.1)
AT4G14358	61 / 2e-11		unknown protein

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T124608 [exp]	903 / 0	AT1G12940	688 / 0.0	nitrate transporter2.5 (.1)
Potri.015G081300 [exp]	899 / 0	AT1G12940	698 / 0.0	nitrate transporter2.5 (.1)
Potri.012G087700 [exp]	775 / 0	AT1G12940	640 / 0.0	nitrate transporter2.5 (.1)
Potri.009G008600 [exp]	561 / 0	AT1G08090	832 / 0.0	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
Potri.009G008500 [exp]	560 / 0	AT1G08090	830 / 0.0	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
Potri.001G348300 [exp]	521 / 0	AT5G14570	509 / 1e-178	high affinity nitrate transporter 2.7 (.1)
Potri.004G213716 [exp]	82 / 2e-19	AT1G08090	105 / 1e-28	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10030902 [exp]	774 / 0	AT1G12940	751 / 0.0	nitrate transporter2.5 (.1)
Lus10030588 [exp]	758 / 0	AT1G12940	737 / 0.0	nitrate transporter2.5 (.1)
Lus10013042 [exp]	631 / 0	AT1G12940	635 / 0.0	nitrate transporter2.5 (.1)
Lus10026527 [exp]	534 / 0	AT5G60770	759 / 0.0	ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Lus10008767 [exp]	350 / 4e-116	AT5G14570	483 / 1e-168	high affinity nitrate transporter 2.7 (.1)
Lus10016120 [exp]	337 / 2e-112	AT1G08090	533 / 0.0	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
Lus10016121 [exp]	301 / 2e-97	AT1G08090	583 / 0.0	LATERAL ROOT INITIATION 1, nitrate transporter 2:1 (.1)
Lus10021444 [exp]	221 / 3e-68	AT5G60770	307 / 1e-101	ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)
Lus10025421 [exp]	184 / 1e-55	ND	193 / 1e-59
Lus10016119 [exp]	154 / 1e-44	AT5G60770	177 / 4e-54	ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, nitrate transporter 2.4 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0015 [poplar] [flax]	MFS	PF07690 [poplar] [flax]	MFS_1	Major Facilitator Superfamily

Representative CDS sequence

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>Potri.T124708.1 pacid=42762249 polypeptide=Potri.T124708.1.p locus=Potri.T124708 ID=Potri.T124708.1.v4.1 annot-version=v4.1

ATGGAGATAGAAGGGCAAGCCACTGTAAAGGAATCTCAGCCTCCAAAATTCGCTCTTCCAGTGGATTCAGAACACAAGGCAACTGAGTTCCGGTTGTTCT

CAGTAGCTGCCCCTCACATGCAGGCATTCCATCTGTCTTGGGTTTCTTTCTTTGCCTGTTTTGTCTCTACTTTTGCTGCTCCACCCCTTCTTCCTATCAT

ACGTGACAACCTCAACCTCACTGCCTCTGACATTGGTAATGCGGGCATTGCATCAGTGTCAGGTGCAGTTTTTGCTCGAGTTGCTATGGGGACTGCTTGT

GACCTCTTTGGACCCCGTCTAGCCTCTGCCTCATTGATCCTCCTCACTGCACCAGCAGTTTACTTCACTTCCATCGCCTCATCTTCTACTTCTTTTCTCC

TGGTGCGTTTTTTCACTGGCTTCTCTCTGTCCACTTTTGTCTCGACTCAATTCTGGATGAGCTCTATGTTTTCAGCCCCGGTAGTTGGCACGGCTAATGG

CGTTGCAGGAGGTTGGGGTAACCTTGGCGGTGGGGCAACGCAACTGATCATGCCCCTTGTGTTTGGCCTCATCCGTGACATTGGAGCCATCAAATTTACA

GCTTGGAGAATTGCGTTTTTCATTCCTGCCCTGTTTCAGACACTATCGGCATTTGCAGTCTTGATCTTTGGCAAGGACTTGCCGGACGGAAACTTTAGGC

GGCTGCAGAAAGCAGGGGATAAAACAAAAGATAAATTCACTAATGTCTTCTATCATGGAATCACAAATTACAGAGGGTGGATCCTGGCGCTCAGTTATGG

GTATTGTTTTGGGGTAGAGCTGACAATAGACAACATTGTCGCAGAATACTTCTATGACAGATTTGACCTCAAACTCCATACAGCAGGAATGATTGCAGCC

AGTTTTGGTCTAGCAAACATTGTTTCTCGACCAGGTGGTGGAATGATCTCAGATGCAGTAGCGAAGAGGTTTGGAATGAGGGGGAGGTTGTGGGCTTTGT

GGATAGTGCAGACCTTGGGAGGTGTTTTCTGCATCATACTTGGACGAGTTGGATCTTTAGGCGCATCCGTTGTGGTGATGATTGTGTTCTCTTTATTCTG

CCAAGCAGCATGTGGACTAACATTTGGGGTGGTGCCTTTTGTCTCACGAAGGTCATTGGGGCTGATATCTGGTATGACTGGAGGTGGTGGAAACGTGGGT

GCAGTTCTAACTCAACTAATTTTCTTCAAAGGATCCAAATACTCAAAAGAGAGAGGGATAATGCTCATGGGTGTCATGATTATATGCTGCACTCTTCCAA

TTTGTTTTATACACTTCCCACAATGGGGTGGAATGTTTTGTGGCCCATCATCTGCAAAGACCGCTACAGAGGAAGACTACTACTTGTCCGAATGGACTTC

AGAGGAGAAGGAGAAAGGCCTGCATCTATCAAGCTTAAAGTTCGCAGATAACAGCAGACGTGAAAGAGGTAGAAAAGAAGGTTCTGAAACCAGGCCAGTA

GATGAAAGCCCATCAACAAAAGTCTAG

AA sequence

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>Potri.T124708.1 pacid=42762249 polypeptide=Potri.T124708.1.p locus=Potri.T124708 ID=Potri.T124708.1.v4.1 annot-version=v4.1

MEIEGQATVKESQPPKFALPVDSEHKATEFRLFSVAAPHMQAFHLSWVSFFACFVSTFAAPPLLPIIRDNLNLTASDIGNAGIASVSGAVFARVAMGTAC

DLFGPRLASASLILLTAPAVYFTSIASSSTSFLLVRFFTGFSLSTFVSTQFWMSSMFSAPVVGTANGVAGGWGNLGGGATQLIMPLVFGLIRDIGAIKFT

AWRIAFFIPALFQTLSAFAVLIFGKDLPDGNFRRLQKAGDKTKDKFTNVFYHGITNYRGWILALSYGYCFGVELTIDNIVAEYFYDRFDLKLHTAGMIAA

SFGLANIVSRPGGGMISDAVAKRFGMRGRLWALWIVQTLGGVFCIILGRVGSLGASVVVMIVFSLFCQAACGLTFGVVPFVSRRSLGLISGMTGGGGNVG

AVLTQLIFFKGSKYSKERGIMLMGVMIICCTLPICFIHFPQWGGMFCGPSSAKTATEEDYYLSEWTSEEKEKGLHLSSLKFADNSRRERGRKEGSETRPV

DESPSTKV

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T124708 [exp]	0	1

Potri.T124708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T124708 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T124708 coexpression network