Plant FIBer expression Database

Potri.T124906 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19420 1292 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
AT5G12350 1275 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT1G69710 858 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT5G42140 808 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT1G76950 788 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT4G14368 752 / 0 Regulator of chromosome condensation (RCC1) family protein (.1)
AT3G23270 735 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT3G47660 689 / 0 Regulator of chromosome condensation (RCC1) family protein (.1)
AT1G65920 593 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
AT5G63860 185 / 2e-50 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G197600
[exp]
2008 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Potri.001G026900
[exp]
1798 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Potri.009G071800
[exp]
1382 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Potri.001G276900
[exp]
1302 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Potri.005G190000
[exp]
805 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Potri.002G070300
[exp]
803 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Potri.008G167500
[exp]
766 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Potri.004G080900
[exp]
670 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Potri.017G139600
[exp]
662 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036030
[exp]
1353 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10024157
[exp]
1333 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10009701
[exp]
1285 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10039525
[exp]
1200 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10016335
[exp]
998 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10002751
[exp]
979 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Lus10018904
[exp]
791 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Lus10028600
[exp]
790 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Lus10042800
[exp]
779 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Lus10036737
[exp]
779 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00415 RCC1 Regulator of chromosome condensation (RCC1) repeat
CL0390 zf-FYVE-PHD PF01363 FYVE FYVE zinc finger
CL0390 PF08381 BRX Transcription factor regulating root and shoot growth via Pin3
CL0390 PF13713 BRX_N Transcription factor BRX N-terminal domain
CL0390 PF16627 BRX_assoc Unstructured region between BRX_N and BRX domain
Representative CDS sequence
>Potri.T124906.1 pacid=42772982 polypeptide=Potri.T124906.1.p locus=Potri.T124906 ID=Potri.T124906.1.v4.1 annot-version=v4.1
ATGGCTGCTTTGGAGCCGACGTTGAGAGTTGGCCCCTTAGAGAGAGACATTGAATTGGCCATCACTGCTCTTAAAAGGGGCACTCAGTTGCTCAAGTATG
GCCGTAGAGGGAAGCCCAAATTTTGCCCCTTCAGGCTGTCGAATGATGAATCTGTTCTAATTTGGATATCTGGGAAAGAGGAGAAGCATCTTAAACTAAG
CCATGTCTCCAGAATTATCCCTGGTCAGCGCACTCCAATTTTTCAGAGATATCCTCGTCCTGAGAAGGAATACCAGTCATTTTCTCTAATATACAGTGAC
AGGTCTTTAGATTTGATATGCAAGGACAAAGAAGAAGCTGAAGTCTGGTTTACTGGTCTAAAGGCACTAATATCAAATCGCCAGATTTGGAAAAAGAGAG
AAGAAACTACAAATGATGGACTTTTATCAGAGGCAAATAGTCCTAGGGCATACACCATTAGAAGTTCTCCTTTGAGCTTTGCATTTGGTAGTGATGATAG
TTCACTGAAGGATGGAATGGATCCTCTTCGTCTTCGTACGCCATATGACAGTCCTCCAAATACTGGTTTAGAGAAGGCATTGTCTGATGTAGTATACACT
GCGCCTCCTAAGGTTTTATTTCCATTAGAATCTGCTTGTGCGCCAGCTCAGTCTCAGTTATTAGGAGGCTCAGATGAAACAACAGGGCGTGCAAAGGTTA
CGAACACAGATAATTTTAGGGTTAGTTTATCAAGTGCTGTTAGCTCATCAAGTCAAGGCTCTGGTCGTGATGAAAATGATGCATTAGGGGATGTTTATAT
TTGGGGGGAGGGCACTGGTGATGGCATTCTAGGTGGTGGAGTTCATAGAATTGGAGGTTCTGGTGTTCAGATGGATTCTTTTGTGCCAAAAGCTTTGGAA
TCTGCAGTTTTACTAGATGTTCAGGCTATAGCTTGTGGTCGGCAACATGCTGCTTTGGTAACAAAACAAGGGGAGGTTTTCTCTTGGGGAGAGGAACTAG
GAGGCAGACTCGGACATGGTGTAGACTCTGATGTTTCACATCCAAAGTTTGTAGATGGACTAAAAAATTTCAATGTTGAACTTGTAGCATGTGGAGAATA
TCATTCTTGTGCGGTAACACTTTCTGGTGATTTGTACATATGGGGTGGTAATGCTTATAATTTTGGACTCTTGGGCTGTGGAAGTGAAGCTACTCAGTGG
GTTCCAAGAAAGTTGGATGGACCACTTGAGGGAATACATGTCTCATCAGTTTCATGTGGACCATGGCACACAGCTGTTGTAACCTCTGCTGGCCAATTGT
TTACTTTTGGAGATGGAACCTTTGGGGTTTTAGGACATGGGGACCGCATAAGCGTGTCAATACCAAGAGAGGTCGAGTCTCTTAAGGGCCTCCGCACCAT
GCGAGCAGCTTGTGGTGTGTGGCACACAGCTGCAGTTGTTGAAATCATGGTTGGGTCATCAAATTCCAGTAATTGTTCTTCAGGAAAGCTCTTCACATGG
GGAGATGGAGATAAATGTCGTCTTGGGCATGGTGATAAGGAAGCTAGACTGGTGCCCACTTGTGTTGCTACTCTTGTTGAACCCAACTTCTGTCAAGTTG
CCTGTGGTCACAGCCTCACTGCTGCACTTACAACCACAGGTCAGGTTTACACCATGGGAAGCCCTGTATATGGTCAATTGGGGAATCCCCAAGCTGATGG
CATGCTCCCTACTCGTGTTGAGGGAAAGCTCATGAAAAATTTTGTTGAAGAATTAGCCTGTGGTGCTTATCATGTTGCAGTTTTGACCTCAAGAACTGAA
GTTTACACATGGGGAAAGGGTGCAAATGGCAGGCTAGGTCATGGTGATGCAGATGATAGAAATTCCCCATCTGTAGTTGAAGCTTTGAAAGACAAACAGG
TTAAAGGTATTGTCTGCGGCACTAGTTTTACTGCAGCTATCTGTCTTCATAAATGGGTATCCGGTATCGATCAATCAATGTGTTCAGGTTGCCACATCCC
ATTTAATTTCAAACGGAAACGGCACAATTGTTATAATTGTGGGCTTGTTTTCTGCCATTCATGTAGTAATAAAAAGTCTCTCAAGGCTTCAATGGCTCCA
AATCCTAACAAACCTTATCGTGTCTGTGATAATTGTCTTAGCAAACTTAGAAGAAGCTCTGAAACTGACTCTTCAGTTCACTCTGCTCTTAGTAGAAGAG
GAAGTGTCAATCAGGGACTAAATGAAGTCGCAGAAAAGACTGAAAATTCAAATTCAAAATCGCATGCTAAGCTTGGAAGAAACTTCTCTATGGAATCATC
TAAAGAGGTGGAAAGTATATCTTCCAGAAGAAACAGGAAGTCAAACTCCAATAGCATTCAGGTTTCACCCTCTGGAAATGATGTTTCTCGGCGCAATACA
TTTAATAACTCTAAATCATTTGGATCCTCCAAGAAATTTTTCTCAGCTTCTCTTCCTGGATCAAGAATTGTGTCTCGAGCAACATCTCCAACATCAAGAC
GATCCAGTCCCCCTCGTGCTGCAACACCAACCCCAACTCTCTCAGCTAATGAGTTGCCGAAACTAGCTGTAGATGGTGCTGGGAGGTTAAATGACAGCCT
GCGAGAAGAAATTGTAAAATTAAGAGCTCAGGTTGAAGAGCTTACAAATAAAGCTCAGCTTCAGGATGTTGAGCTGGAAAGAACAACCAAGCAGTTGAAG
GAGGCTATTGCAGTTGCGGAGGAGGAAACTACTAAATGCAAGGCAGCAAAGGAAGTAATTAAGTCACTCACGGCCCAATTGAAAGAAGTGGCTGAAAGGG
TACCTGTTGGAGCATCAAGAAACAGCAACTCGCCCTCTTTTTATTGCTCTAGCAACACAACTCCATGGGACGTTTCTCCTGGAATTCTTGAGCAGCTCAG
TAGTCCCACGGCATGTCATGAACAAGATTCAAAAGGATCAAACAGCCTGGTAATTTCGAATGTGTCAGGGACTACTACTACTACTAATCAGACTCCACAT
CACTCCGAAGTGACACAGATAGAAACAACAGTGAGGAATAAGAACAGAATAGCAAAAGTTGAACCCACTAATGGCGATGAATGGGTTGAACAAGACGAAC
CAGGTGTATATATTACCCTTGTTTCCTTGCATGGAGGTGCGAAGGATCTCAAACGTGTCCGCTTCAGTCGGAAGCGGTTCAGCGAAAAACAAGCAGAACA
ATGGTGGGCAGCCAACAGAGCGAGAGTATACCAGCAATACAACGTTCCCATGGGTGACAGGTCTATTGTTAGTGTGGGAAGGGAAGGGTTAACTCAATGA
AA sequence
>Potri.T124906.1 pacid=42772982 polypeptide=Potri.T124906.1.p locus=Potri.T124906 ID=Potri.T124906.1.v4.1 annot-version=v4.1
MAALEPTLRVGPLERDIELAITALKRGTQLLKYGRRGKPKFCPFRLSNDESVLIWISGKEEKHLKLSHVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYSD
RSLDLICKDKEEAEVWFTGLKALISNRQIWKKREETTNDGLLSEANSPRAYTIRSSPLSFAFGSDDSSLKDGMDPLRLRTPYDSPPNTGLEKALSDVVYT
APPKVLFPLESACAPAQSQLLGGSDETTGRAKVTNTDNFRVSLSSAVSSSSQGSGRDENDALGDVYIWGEGTGDGILGGGVHRIGGSGVQMDSFVPKALE
SAVLLDVQAIACGRQHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKFVDGLKNFNVELVACGEYHSCAVTLSGDLYIWGGNAYNFGLLGCGSEATQW
VPRKLDGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSIPREVESLKGLRTMRAACGVWHTAAVVEIMVGSSNSSNCSSGKLFTW
GDGDKCRLGHGDKEARLVPTCVATLVEPNFCQVACGHSLTAALTTTGQVYTMGSPVYGQLGNPQADGMLPTRVEGKLMKNFVEELACGAYHVAVLTSRTE
VYTWGKGANGRLGHGDADDRNSPSVVEALKDKQVKGIVCGTSFTAAICLHKWVSGIDQSMCSGCHIPFNFKRKRHNCYNCGLVFCHSCSNKKSLKASMAP
NPNKPYRVCDNCLSKLRRSSETDSSVHSALSRRGSVNQGLNEVAEKTENSNSKSHAKLGRNFSMESSKEVESISSRRNRKSNSNSIQVSPSGNDVSRRNT
FNNSKSFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRAATPTPTLSANELPKLAVDGAGRLNDSLREEIVKLRAQVEELTNKAQLQDVELERTTKQLK
EAIAVAEEETTKCKAAKEVIKSLTAQLKEVAERVPVGASRNSNSPSFYCSSNTTPWDVSPGILEQLSSPTACHEQDSKGSNSLVISNVSGTTTTTNQTPH
HSEVTQIETTVRNKNRIAKVEPTNGDEWVEQDEPGVYITLVSLHGGAKDLKRVRFSRKRFSEKQAEQWWAANRARVYQQYNVPMGDRSIVSVGREGLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T124906
[exp]
0 1

Potri.T124906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.