Plant FIBer expression Database

Potri.T124907 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35200 358 / 2e-122 ENTH/ANTH/VHS superfamily protein (.1)
AT5G57200 278 / 8e-91 ENTH/ANTH/VHS superfamily protein (.1)
AT4G25940 273 / 1e-88 ENTH/ANTH/VHS superfamily protein (.1)
AT2G01600 272 / 1e-88 ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910 269 / 3e-86 ENTH/ANTH/VHS superfamily protein (.1)
AT1G03050 150 / 3e-42 ENTH/ANTH/VHS superfamily protein (.1)
AT4G02650 144 / 1e-39 ENTH/ANTH/VHS superfamily protein (.1)
AT2G25430 139 / 7e-38 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
AT1G05020 131 / 7e-35 ENTH/ANTH/VHS superfamily protein (.1)
AT4G32285 129 / 3e-34 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G125284
[exp]
418 / 6e-146 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.T125107
[exp]
415 / 1e-144 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G065100
[exp]
394 / 1e-136 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.008G132100
[exp]
280 / 1e-91 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G142800
[exp]
278 / 6e-91 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.010G110000
[exp]
276 / 2e-90 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G075800
[exp]
272 / 2e-88 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G118100
[exp]
155 / 5e-44 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Potri.002G224500
[exp]
139 / 9e-38 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038122
[exp]
376 / 2e-129 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10005184
[exp]
372 / 1e-127 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469
[exp]
275 / 3e-89 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10025462
[exp]
272 / 3e-88 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10007933
[exp]
276 / 9e-88 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610
[exp]
269 / 3e-87 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10021796
[exp]
268 / 1e-86 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Lus10003642
[exp]
259 / 8e-84 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1)
Lus10015335
[exp]
236 / 1e-73 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1)
Lus10020824
[exp]
143 / 3e-39 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0009 ENTH_VHS PF07651 ANTH ANTH domain
Representative CDS sequence
>Potri.T124907.1 pacid=42776697 polypeptide=Potri.T124907.1.p locus=Potri.T124907 ID=Potri.T124907.1.v4.1 annot-version=v4.1
ATGTCAGGAGGTGGAACCCAAAACAGTTTGAGGAGAGCACTCGGTGCCCTCAAGGATACTACCACTGTTTCATTGGCCAAAGTCAATAGTGATTACAAGG
AATTGGATATTGCTATAGTGAAGGCCACAAATCACTATGAACGACCTGCAAAGGAAAGACACATTAGAGCTATTTTTGCTGCCGTTTCAGCTACTAGACC
TCGCGCTGATGTTGCATATTGCATCCATGCTCTTGCACGGCGTTTATCAAGGACACATAACTGGGCGGTTGCATTGAAAACTTTAATCGTTATTCATCGG
GCTTTGAGAGAAGTGGACCAGACGTTCCACGAGGAGATCATTAATTATGGAAGAAGCCGAAGCCATATGCTTAACATGGCCCATTTCAAAGATGATTCCA
GTCCAAATGCATGGGATTTTTCTGCCTGGGTTCGCACCTATGCCTTATTTTTGGAGGAGAGGTTGGAATGCTTTCGCGTGTTGAAGTATGATGTTGAGAT
GGATCGACCTCGGACCAAAGATCTGGACACAGTTGAAATACTGGAGCAACTGCCAGCTTTGCAACAGCTTCTTTTCCGCATTCTTGGTTGTCAGGCATGG
ATGTTGTTGGTGTTAATATCAGGATCTTGTGGAAATACATGTGGTAATATGGTTCTTTCTACAGAACAACTTATTCTTAACTTTTTCTACAGTACTTAA
AA sequence
>Potri.T124907.1 pacid=42776697 polypeptide=Potri.T124907.1.p locus=Potri.T124907 ID=Potri.T124907.1.v4.1 annot-version=v4.1
MSGGGTQNSLRRALGALKDTTTVSLAKVNSDYKELDIAIVKATNHYERPAKERHIRAIFAAVSATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHR
ALREVDQTFHEEIINYGRSRSHMLNMAHFKDDSSPNAWDFSAWVRTYALFLEERLECFRVLKYDVEMDRPRTKDLDTVEILEQLPALQQLLFRILGCQAW
MLLVLISGSCGNTCGNMVLSTEQLILNFFYST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T124907
[exp]
0 1

Potri.T124907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.