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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G45616	384 / 1e-116	AtRLP6	receptor like protein 6 (.1)
AT1G47890	372 / 5e-112	AtRLP7	receptor like protein 7 (.1)
AT3G11010	365 / 2e-110	AtRLP34	receptor like protein 34 (.1)
AT2G33060	302 / 2e-88	AtRLP27	receptor like protein 27 (.1)
AT3G25020	300 / 7e-87	AtRLP42	receptor like protein 42 (.1)
AT1G71400	292 / 2e-84	AtRLP12	receptor like protein 12 (.1)
AT5G25910	291 / 2e-84	AtRLP52	receptor like protein 52 (.1)
AT3G05370	287 / 2e-82	AtRLP31	receptor like protein 31 (.1)
AT3G28890	281 / 1e-81	AtRLP43	receptor like protein 43 (.1.2)
AT4G13920	283 / 4e-81	AtRLP50	receptor like protein 50 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.009G112061 [exp]	1652 / 0	AT1G45616	405 / 1e-124	receptor like protein 6 (.1)
Potri.012G028500 [exp]	1009 / 0	AT1G45616	371 / 6e-112	receptor like protein 6 (.1)
Potri.012G025400 [exp]	1005 / 0	AT1G45616	399 / 7e-122	receptor like protein 6 (.1)
Potri.012G028600 [exp]	947 / 0	AT1G47890	395 / 1e-120	receptor like protein 7 (.1)
Potri.012G010300 [exp]	922 / 0	AT3G11080	385 / 3e-118	receptor like protein 35 (.1)
Potri.012G009200 [exp]	884 / 0	AT1G45616	386 / 7e-118	receptor like protein 6 (.1)
Potri.012G027600 [exp]	876 / 0	AT1G71400	395 / 1e-121	receptor like protein 12 (.1)
Potri.012G010445 [exp]	864 / 0	AT3G28890	360 / 4e-111	receptor like protein 43 (.1.2)
Potri.012G010101 [exp]	860 / 0	AT1G45616	379 / 6e-115	receptor like protein 6 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10026415 [exp]	371 / 3e-111	AT1G47890	424 / 3e-131	receptor like protein 7 (.1)
Lus10003389 [exp]	369 / 9e-111	AT1G45616	432 / 7e-135	receptor like protein 6 (.1)
Lus10042239 [exp]	366 / 3e-109	AT1G45616	395 / 1e-121	receptor like protein 6 (.1)
Lus10006825 [exp]	357 / 4e-106	AT1G47890	377 / 6e-114	receptor like protein 7 (.1)
Lus10032335 [exp]	294 / 5e-85	AT3G23110	372 / 7e-116	EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
Lus10014910 [exp]	292 / 4e-84	AT1G71400	357 / 7e-110	receptor like protein 12 (.1)
Lus10011039 [exp]	294 / 4e-82	AT3G11010	367 / 5e-110	receptor like protein 34 (.1)
Lus10011064 [exp]	281 / 1e-79	AT1G45616	366 / 2e-111	receptor like protein 6 (.1)
Lus10003387 [exp]	280 / 1e-78	AT1G47890	394 / 3e-120	receptor like protein 7 (.1)
Lus10024721 [exp]	271 / 6e-77	AT3G23110	369 / 1e-114	EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0022 [poplar] [flax]	LRR	PF00560 [poplar] [flax]	LRR_1	Leucine Rich Repeat
CL0022 [poplar] [flax]		PF08263 [poplar] [flax]	LRRNT_2	Leucine rich repeat N-terminal domain
CL0022 [poplar] [flax]	LRR	PF13855 [poplar] [flax]	LRR_8	Leucine rich repeat

Representative CDS sequence

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>Potri.T125004.1 pacid=42802274 polypeptide=Potri.T125004.1.p locus=Potri.T125004 ID=Potri.T125004.1.v4.1 annot-version=v4.1

ATGGGATGTTTACTACGGTTCACTCAGTCTGTGTCTTTAATTTTGTTTCTCTTGCATTTTAATCCAACAGTTTCGTCATCCTTGTCTTCAAACTTCTCCT

CTTCAACTCAATTGTGTGCCCGTGACCAAAGTATTCATCTGCTCCAATTCAAAGAATCTTTTTTCATTGATCCTTCTGCTTCTTTTGAGGATTGTGAAAA

TCCCAAGACAGAGTCATGGATAGAGGGCACAGATTGCTGCTTGTGGGATGGGGTGACTTGCGACATCAAGAGTGGGCAAGTCATTGGGCTTGACCTTGCC

TGCAGCATGCTTTATGGCGCTCTCCATTCCAATAGCACTCTCTTCTCCCTTCATCATCTTCAAAAGCTCGACCTCTCTTACAATGATTTCAATCTCTCTC

ATATTTCATCTCAGTTTGGCCACTTTTCCAATTTGACACATCTTAACCTAAACTACTCGGGTTTTACTGGCCTAGTTCCATCACAAATCTCTCATCTGTC

CAAACTGGTTTCACTTGATCTCTCTTATAATAACAAACTGGCACTAGAACCAATTCCTTTTAACAAGCTTGTTCAAAACCTAACCAAGCTAAGAGAACTT

CATTTGAGCGAGGTAGACATGTCAATGGTTGTACCCAGTTTCTTGATGAACCTTTCTTCTCCTTTGTCATCACTCCAACTCGTTAGATGTGGATTGCAAG

GGAAATTACCAAGTAACGCTCATGGGCTATCAAACTTGCAGCTGCTTGATTTATCGGAGAACATAGACCTTACTGGCTCTTTTCCACCATTCAATGTGAG

TAATGCTCTTTCATACTTGGATCTATCAATGACGGGGATTTCAATCCATCTAGAACATGATCCAGTTAATAATTTGAAGTCGGTGAAGCAATTGTATCTT

AGACAATGCAATTTTACTGGCTCAAATCTACCACGGCTTGGCAACCTCACACAACTCACTGTGTTGGACATTTCATATAACAACTTGAGTGGTCACATCC

CTTTCTCTATAGGAAAACTTAAGCACCTCCAGACCTTGAATCTCGGATTCAACAATTTTACAGGTCCGGTTCCATCTGATTTTGAGCAGCTCACTGAGTT

GGATTCACTTGATCTCTCTGGGAACTCTTACCTGACACTAGATTCATCTTCTCTTAACAAGCTTGTTCAAAACCGAACCAAGTTAAGAAAACTCCTTTTG

CGGTGGGTAAATATGTCTTTGGTTGTACCCAATTCCTTGAAGAATTTGTCGTCTTCTTTGTCAATTCTTTCTTTCGGGAATTGTGGGCTGCGAGGGGAAT

TCCCAGCTAACATCTTTCTCCTACCTAACCTTGAATTTCTCAATTTGGGGGGTAACGTAGGCCTCACAGGTTCTTTTCCTTCCTCCAATGTGAGCAGTTC

CCTCGAGGACTTGGCTCTTTTTGATACGAAAATCTCAATTTCTATCGACAATGACTTTATCAATAATCTAAAGTCGTTGAAAAATCTGTATCTCAGTAAC

TGTAACATTAGCAAAAGATCAAATCTAGCCCTACTTGGTAACCTCACACAGCTTACTGCATTAGATCTCTCATTTAATAATTTGAGTGGCCGCATCCCGT

CATCTCTTGCAAACCTTGTGAATCTCAATTTGTTGGATCTTAGTTCCAATAATTTCAAGGGTCAGATTCCAGATTTTTTGGGTAGCCTGACACAACTTCA

ACGTTTATTTTTATCAGATAATCAATTGCTAGGCCCTATCTCTCCTCAAATAAGTAGCCTTTCAAATCTAATAGCTCTCATGTTATCTGATAACTTGTTC

ACAGGCACAATACCGTCCTTTTTGTTTTCTCGTCCCTCTCTGCAGTATTTGGACCTCCGTAGTAACTTATTCACTGGGAATTTAAGTGAATTCCAGTACA

ATTCATTAATATTGCTTGATTTGAGCAATAACCACTTGCATGGCCCAATTCCAAGTTCAGTTTTCAATCAAGAGAACTTGATGGTCCTTAAACTTGCATC

CAACAACAAGTTCACAGGAGAGATTTCTTCTTCTGCTTGTAAGCTGACAGCCCTACAAGTCCTTGACTTGTCCAACAACAGCTTGAGTGGTTTTATACCA

CAATGTCTGGGGAACTTTAGCGACAGTCTCTCAGTGTTGCATCTTGGCATGAATGATCTCCAAGGCACAATCCTTTCAAGGTTTTTGGTGGGGAATAACT

TGAGATATCTCAATCTCAATGGCAACGAATTGGAAGGGGAAATACCACCATCTATGATCAACTGTACACAATTGGAGGTTCTTGATCTTGGCTTCAATAA

GATAAAAGGCAAGTTCCCCTACTTTCTGGATACGCTTCAAGAGCTACAGGTTCTTGTTCTAAAATCCAACGAACTCCATGGGTTTGTGAAAGGTCCGACG

ACCAACTACGCCTTTTCAAAACTAAGGATTTTTGACATCTCCAGCAATAATTTTAGTGGACCATTGCCAACTGGGTATTTCAATGGTCTGGAAGCAATGA

AGACCTTGGATCAAGATATGATTTACATGAAGGTTAGAAACATCAGTTATGATTATTCTGTAAAACTGACGTGGAAAGGGCTGGAAATTGAGTTTGTGAA

AATTAGAAGTACCCTCGCATTCATTGATTTGTCGCACAACAGTTTTATTGGAGAGATACCAGAGTCGATTGGAAAGCTTAATGCACTTCAACAGCTAAAC

TTCTCTCACAACTCCCTTACAGGATATATTCAACCTTCATTGGGGAATTTGGCCAATCTGGAATCGTTAGATCTCTCTTCAAATTTGCTTACGGGAAGGA

TTCCGATGCAGTTGGCAGATCTTACATTTCTTAGTGTCCTAAACCTTTCACATAACCAGCTAGAGGGACCCATACCTAAAGGAAAGCAGTTCAACACGTT

CAATAAGGGCTCATTCGAAGGAAACTCGGGCTTGTGTGGATTTCAAATCTCAAAGGAATGCAATAGTGGTGAGACACAACAACCACCACCATCAAACTCC

GAAGAAGGAGATGATTCATCACTGTTTGGAGATGGATTTGGATGGAAAGCAGTTGTGATGGGGTATGGATGTGGATTTGTGCTTGGAGCTACAGTGGGAT

ACATAGTGTTTAGAACAAGAAAACCGGCATGGTTTGTGAGGATGGTCGAAGTTCAATGGAATCTGAAAACAAAAGGAAGAAAGAAGAAAGCTCACAGAAA

CGGTGCAAGAAGAAACTAA

AA sequence

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>Potri.T125004.1 pacid=42802274 polypeptide=Potri.T125004.1.p locus=Potri.T125004 ID=Potri.T125004.1.v4.1 annot-version=v4.1

MGCLLRFTQSVSLILFLLHFNPTVSSSLSSNFSSSTQLCARDQSIHLLQFKESFFIDPSASFEDCENPKTESWIEGTDCCLWDGVTCDIKSGQVIGLDLA

CSMLYGALHSNSTLFSLHHLQKLDLSYNDFNLSHISSQFGHFSNLTHLNLNYSGFTGLVPSQISHLSKLVSLDLSYNNKLALEPIPFNKLVQNLTKLREL

HLSEVDMSMVVPSFLMNLSSPLSSLQLVRCGLQGKLPSNAHGLSNLQLLDLSENIDLTGSFPPFNVSNALSYLDLSMTGISIHLEHDPVNNLKSVKQLYL

RQCNFTGSNLPRLGNLTQLTVLDISYNNLSGHIPFSIGKLKHLQTLNLGFNNFTGPVPSDFEQLTELDSLDLSGNSYLTLDSSSLNKLVQNRTKLRKLLL

RWVNMSLVVPNSLKNLSSSLSILSFGNCGLRGEFPANIFLLPNLEFLNLGGNVGLTGSFPSSNVSSSLEDLALFDTKISISIDNDFINNLKSLKNLYLSN

CNISKRSNLALLGNLTQLTALDLSFNNLSGRIPSSLANLVNLNLLDLSSNNFKGQIPDFLGSLTQLQRLFLSDNQLLGPISPQISSLSNLIALMLSDNLF

TGTIPSFLFSRPSLQYLDLRSNLFTGNLSEFQYNSLILLDLSNNHLHGPIPSSVFNQENLMVLKLASNNKFTGEISSSACKLTALQVLDLSNNSLSGFIP

QCLGNFSDSLSVLHLGMNDLQGTILSRFLVGNNLRYLNLNGNELEGEIPPSMINCTQLEVLDLGFNKIKGKFPYFLDTLQELQVLVLKSNELHGFVKGPT

TNYAFSKLRIFDISSNNFSGPLPTGYFNGLEAMKTLDQDMIYMKVRNISYDYSVKLTWKGLEIEFVKIRSTLAFIDLSHNSFIGEIPESIGKLNALQQLN

FSHNSLTGYIQPSLGNLANLESLDLSSNLLTGRIPMQLADLTFLSVLNLSHNQLEGPIPKGKQFNTFNKGSFEGNSGLCGFQISKECNSGETQQPPPSNS

EEGDDSSLFGDGFGWKAVVMGYGCGFVLGATVGYIVFRTRKPAWFVRMVEVQWNLKTKGRKKKAHRNGARRN

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125004 [exp]	0	1

Potri.T125004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125004 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125004 coexpression network