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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G54460	1424 / 0		SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
AT5G22750	150 / 2e-36	RAD5A, RAD5	DNA/RNA helicase protein (.1)
AT5G05130	115 / 1e-25		DNA/RNA helicase protein (.1)
AT5G43530	109 / 7e-24		Helicase protein with RING/U-box domain (.1)
AT1G11100	100 / 6e-21		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2)
AT1G61140	87 / 6e-17	EDA16	embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
AT1G05120	85 / 2e-16		Helicase protein with RING/U-box domain (.1)
AT3G20010	84 / 7e-16		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
AT1G02670	83 / 8e-16		P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
AT1G50410	79 / 1e-14		SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G197701 [exp]	2603 / 0	AT3G54460	1422 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
Potri.004G189400 [exp]	148 / 8e-36	AT5G22750	1506 / 0.0	DNA/RNA helicase protein (.1)
Potri.006G035700 [exp]	109 / 7e-24	AT5G05130	1117 / 0.0	DNA/RNA helicase protein (.1)
Potri.016G033700 [exp]	103 / 3e-22	AT5G05130	710 / 0.0	DNA/RNA helicase protein (.1)
Potri.016G033800 [exp]	89 / 2e-17	AT5G05130	650 / 0.0	DNA/RNA helicase protein (.1)
Potri.014G154600 [exp]	82 / 2e-15	AT1G05120	1058 / 0.0	Helicase protein with RING/U-box domain (.1)
Potri.003G083400 [exp]	78 / 4e-14	AT5G43530	1342 / 0.0	Helicase protein with RING/U-box domain (.1)
Potri.007G000700 [exp]	74 / 7e-13	AT1G50410	1083 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Potri.004G037700 [exp]	74 / 1e-12	AT1G61140	1007 / 0.0	embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024158 [exp]	891 / 0	AT3G54460	833 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
Lus10024159 [exp]	655 / 0	AT3G54460	584 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
Lus10039526 [exp]	579 / 0	AT3G54460	499 / 9e-158	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
Lus10043365 [exp]	150 / 2e-36	AT5G22750	1445 / 0.0	DNA/RNA helicase protein (.1)
Lus10041156 [exp]	117 / 3e-26	AT5G43530	1222 / 0.0	Helicase protein with RING/U-box domain (.1)
Lus10039001 [exp]	113 / 4e-25	AT5G05130	1002 / 0.0	DNA/RNA helicase protein (.1)
Lus10011211 [exp]	94 / 6e-19	AT1G61140	959 / 0.0	embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Lus10018465 [exp]	81 / 7e-15	AT1G61140	546 / 2e-175	embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Lus10013452 [exp]	77 / 1e-13	AT1G50410	1003 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Lus10041008 [exp]	77 / 1e-13	AT1G50410	1060 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF00176 [poplar] [flax]	SNF2_N	SNF2 family N-terminal domain
CL0023 [poplar] [flax]	P-loop_NTPase	PF00271 [poplar] [flax]	Helicase_C	Helicase conserved C-terminal domain
CL0023 [poplar] [flax]		PF07496 [poplar] [flax]	zf-CW	CW-type Zinc Finger

Representative CDS sequence

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>Potri.T125006.1 pacid=42773001 polypeptide=Potri.T125006.1.p locus=Potri.T125006 ID=Potri.T125006.1.v4.1 annot-version=v4.1

ATGGGCGATCACGATGATGATCCTTACCCATACCACAAACTCTGCGGTTACCTCTGTACAGTTCTCACATCACCACACCCACTCCCTTTCCTTTCTCATT

GCCATCTCATCACAGACGGAAGCCACCAACAAATCAGATTCAAATCCCTAAACGACGTCGTTCTGTCTCCGCTTTCCAATCCTTACGGCCAGAACGGCGC

GGTTTCTCTTCAAGAGAACAGTAATGCGGTTGGGAAGAAGACGACGAAGAAGAAGAGAATGGCGAAGAGGGGGAGTTGTTTGAAGAAAAGCGGTAATTCA

GTGGTGGAGAAGAAGAGAGTAGGGAGGAGGGTAATTGGGATGGTGAATGGTAGTGTGAGCGTGGTGCATCAAATTCGCGCGCTTGTAATGCACAAGTGTG

TTAAGATCTTAGCGCGTGTGTTGCATGTTGCTGAGAGTGAGGGTGAGGTTGTTGAAGTGAGAGTGGTGGTGCTTGTTGATGTTTATTTGCCGGTTTCGGT

TTGGTCCGGTGGGCAGTTTCCCAAGTCTGGGCCAATTGCTGGATCTCTCTTTCGGCACTTGAGTTGCGATTGGGAGAAGAGGAGGTCCATGCTTGTTGAT

GGAGGAGAGTATTTTAAAAATGCTCTTGGAGATCATAGGAGCATTTGGAATCTTTCTGGTTGTCATGTTCTTGGATGCAATTTGCATTGTGATGTCCCTG

ATTCTTCAAGCAAAAAGCGTTTTGAACTTCATGAAATTTTTAAAGGTTTACCCAGCACGGAAAATAAGGAACAGTATTACTCTTCAAGAGTAAAACCAGC

AGATAACTCTTTGGAATCTGGTATTTGGGATTTAACTGGTGATATCTTGATGAGCATTCTTTCTGCACTTGGTCCAAAGGACCTTGTCAGGGTTGCTGCA

ACCTGTCACCATTTGAGATCCCTGGCTGTTTCAATTATGCCATGTATGAAACTTAAATTATTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTACAGC

GCGAGCGGAATGCTCAAGTCTTGCCACATCCTCTGTACACTAATTTATCCACAGAAGATGGGTTTACATTTCATGTAAGTACTGTTTCTGGTGAAATAAT

TACTGGAGTAGCTCCAACTGTAAGAGACTTTCATGGGGGAATGTTCTGTGATGAACCTGGCTTAGGAAAGACTATCACTGCTCTTTCTCTTATTCTGAAG

ACAAGAGGAACAGTAGCTGACCCACCAGATGGAGTTCAAATAACCTGGTGTACACATAATGGAGAACAGAGATGTGGCTATTACGAGGTTGATGGCAGAA

ACTTCACTCCTAATAACACACCCCTGGCAAAAAGGGTAATGAACCAGAGTGCACGCAGGGGACAATTATCTTTGGATAAATCCACTCTGATGAATGATCC

AGGTCAACAGATTGAGGGGTTTAGCAATTCCTGTCCAGTTAATGGAATGGAATCGTCACCAGCTCCATCTTCAGATCAAACAGCACGTGTAATTCAATTG

AGTCGCGTGAAGAGAAATCTTCTCCATGAATATGATGAAACACCTGTTTTTAGTAACAAGAAAAAGAGGAAGCATCGTTCTAATGCCCCTATATATGTCT

CAGAGGAACAACGGCATGATAGAGCACGCAGGTTGAATTTGATTACTGGACATTTTAGGGATTTTAATGAGACTTGGGTTCAATGCGATGCATGCAGAAA

GTGGAGGAAGCTTACAAGCAGTGTAGCAGATACTGATGCTGCATGGTTTTGTAGCATGAATACAAACCCTGAACGTCAGAGTTGTAGAGATGCTGAAGAA

GCTTGGGATGACAGCTGTTCCTTAACTCATGTACCGGGATTTCACACCAAAGGAACTTCAGGGGGGGAGGAGCAAAATGTGTCATTTTTCACTAGTGTTC

TCAAGGAGCACTATTCCATGATAAACTCTAAAACCAAGAAAGCTTTGACTTGGCTGGCTAAACTTTCTCCAGAAAGACTTTCTTTAATGGAAACAATTGG

TTTGGCAAGTCCGGTCGTAGGTACTGGTTCTGTATCTGGTGGTGGAGATTCCCATGGGTTTCATAAAATATTTGAAGCATTTGGTCTTGTACGGAGAGTA

GAAAAGGGAGCCAGTAAGTGGTGTTACCCGCAGAAACTTGAAAACTTAGCATTTGATTTGGCTGCTTTTAGAATTGCTATCTGCAAGCCGTTGGATTCAG

TCAGGTTATATTTATCAAGAGCAACCCTAGTTGTTGTCCCAGCAAATCTAGTTGATCATTGGAAAACCCAGATAGAAAAGCATGTCAAACCTGGCCAGTT

GCGGCTGTGTGTCTGGACTAATCATAAAAAGCCTTCTGCTCACAGTCTGGCATGGGATTATGATGTTGTTATAACAACCTTCAGTCGATTAAGTGCTGAG

TGGGGTCCCAGGAAAAAAAGTCCTCTGATGCAAGTGCATTTTCTCCGGGTCATGTTAGATGAGGGACACACCCTTGGCTCTAGTCTGAGCTTGACAAACA

AATTGCAAATGGCTATGTCATTGATGGCTTCAAATCGCTGGTTACTAACAGGAACACCAACACCTAACACACCCAATAGCCAGCTGTCTCATCTCCAGCC

AATGCTTAAGTTTCTACAGGAGGAAGCGTATGGGCTGAATCAAAAGTCATGGGAAGCCGGTGTTCTTAGACCATTTGAAGCCGAGATGGAAGAAGGCCGC

ACACGCTTGTTGCATTTGCTCCACAGATGCTTGATTAGTTCTAGGAAGACAGATTTGAAAACTATCCCTCCATGCATCAAGAAGGTGACATTCCTCAATT

TTACCAAGGATCATGCAAGAAGCTATAATGAATTGGTAGTTACTGTGCGACGTAATATTCTAACTGCTGACTGGAATGATCCTTCTCATGTTGAGAGTTT

GCTTAACCCAAAGCAGTGGAAGTTTCGAAGTACCCTTATTAGAAATGTCAGGCTATCTTGTTGTGTGGCAGGGCATATTAAAGTGGCAGAAGTTGGTGAA

GATATTCAGGAAACAATGGATATTCTGATTGAAAAAGGACTTGATCCCATTTCAGAGGAGCATGCTTTGATAAAATACTATCTTCAGTATGGTGGTAACT

GTCTCAGATGCGAGGAATGGTGTCGTCTACCTTTCATCACGCCATGCAGGCATCTTTTGTGCCTTGATTGTGTTGCTTTGAATAGTGAAAAGTGTACTTT

TCCTGGCTGTGGTTACTCATATGAGATGCAAAGTCCAGAAGTATTGACCCGACCAGAAAATCCAAACCCGAAATGGCCTGTCCCCAAAGATCTTATTGAG

TTGCAACCTTCCTATAAACAGGATGACTGGGATCCAGATTGGCAGTCAACATCTAGCAGTAAAGTTGCGTACCTTGTACAGAAGCTGAAAGCATTGCAGG

AGGCCAGTAGAGAGAGTAGCTGGTCCATTGACAAGGATACTCAAATAAGTGTTTCTAGTTTAGTGCTTCAGCAGGACTGCTTTAGTGTTAACAGGGCAGC

CATGGAGAAAGTTATAATATTTTCTCAATTTCTTGAGCATATACATGTGATTGAACAGCAGTTAGCATTTGCCGGTATTAAATTTGCTGGAATGTATAGT

CCAATGCCTCAAATCAACAAGATGAAATCACTGGCCACCTTCCAGCATGACGCCACATGTATGGCTCTGTTAATGGATGGCAGTGCTGCATTGGGCCTTG

ATTTGAGCTTTGTAACTCATGTATTCTTAATGGAGCCAATCTGGGACAGAAGCATGGAAGAACAAGTGATAAGTCGAGCTCATCGGATGGGTGCTACTCG

CCCCATCAATGTGGAGACTTTAGCCATGCGTGGTACAATTGAGGAGCAAATGCTAGAATTCCTACAGGATGCTGATGGTTGTAGAAGAGTTTTGAAAGAA

GAGTCAAGTAAAACTGACCATGCAGGGGCACGGCTCCACCGATCTCTACATGATTTTGCTGAGAGCGACTACTTGGCCCACCTTAGCTTTGTGCATACAG

GTTCAAGAGCGTAA

AA sequence

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>Potri.T125006.1 pacid=42773001 polypeptide=Potri.T125006.1.p locus=Potri.T125006 ID=Potri.T125006.1.v4.1 annot-version=v4.1

MGDHDDDPYPYHKLCGYLCTVLTSPHPLPFLSHCHLITDGSHQQIRFKSLNDVVLSPLSNPYGQNGAVSLQENSNAVGKKTTKKKRMAKRGSCLKKSGNS

VVEKKRVGRRVIGMVNGSVSVVHQIRALVMHKCVKILARVLHVAESEGEVVEVRVVVLVDVYLPVSVWSGGQFPKSGPIAGSLFRHLSCDWEKRRSMLVD

GGEYFKNALGDHRSIWNLSGCHVLGCNLHCDVPDSSSKKRFELHEIFKGLPSTENKEQYYSSRVKPADNSLESGIWDLTGDILMSILSALGPKDLVRVAA

TCHHLRSLAVSIMPCMKLKLFPHQQAAVEWMLQRERNAQVLPHPLYTNLSTEDGFTFHVSTVSGEIITGVAPTVRDFHGGMFCDEPGLGKTITALSLILK

TRGTVADPPDGVQITWCTHNGEQRCGYYEVDGRNFTPNNTPLAKRVMNQSARRGQLSLDKSTLMNDPGQQIEGFSNSCPVNGMESSPAPSSDQTARVIQL

SRVKRNLLHEYDETPVFSNKKKRKHRSNAPIYVSEEQRHDRARRLNLITGHFRDFNETWVQCDACRKWRKLTSSVADTDAAWFCSMNTNPERQSCRDAEE

AWDDSCSLTHVPGFHTKGTSGGEEQNVSFFTSVLKEHYSMINSKTKKALTWLAKLSPERLSLMETIGLASPVVGTGSVSGGGDSHGFHKIFEAFGLVRRV

EKGASKWCYPQKLENLAFDLAAFRIAICKPLDSVRLYLSRATLVVVPANLVDHWKTQIEKHVKPGQLRLCVWTNHKKPSAHSLAWDYDVVITTFSRLSAE

WGPRKKSPLMQVHFLRVMLDEGHTLGSSLSLTNKLQMAMSLMASNRWLLTGTPTPNTPNSQLSHLQPMLKFLQEEAYGLNQKSWEAGVLRPFEAEMEEGR

TRLLHLLHRCLISSRKTDLKTIPPCIKKVTFLNFTKDHARSYNELVVTVRRNILTADWNDPSHVESLLNPKQWKFRSTLIRNVRLSCCVAGHIKVAEVGE

DIQETMDILIEKGLDPISEEHALIKYYLQYGGNCLRCEEWCRLPFITPCRHLLCLDCVALNSEKCTFPGCGYSYEMQSPEVLTRPENPNPKWPVPKDLIE

LQPSYKQDDWDPDWQSTSSSKVAYLVQKLKALQEASRESSWSIDKDTQISVSSLVLQQDCFSVNRAAMEKVIIFSQFLEHIHVIEQQLAFAGIKFAGMYS

PMPQINKMKSLATFQHDATCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGATRPINVETLAMRGTIEEQMLEFLQDADGCRRVLKE

ESSKTDHAGARLHRSLHDFAESDYLAHLSFVHTGSRA

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125006 [exp]	0	1

Potri.T125006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125006 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125006 coexpression network