Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G14540	142 / 1e-36	Protein of unknown function (DUF1421) (.1)
AT3G01560	123 / 6e-30	Protein of unknown function (DUF1421) (.1)
AT4G28300	68 / 5e-12	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.012G083200 [exp]	638 / 0	AT5G14540	147 / 3e-38	Protein of unknown function (DUF1421) (.1)
Potri.001G348500 [exp]	110 / 1e-25	AT5G14540	185 / 1e-51	Protein of unknown function (DUF1421) (.1)
Potri.019G095400 [exp]	69 / 2e-12	AT4G28300	261 / 5e-81	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Potri.013G131600 [exp]	62 / 5e-10	AT4G28300	284 / 1e-89	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10042086 [exp]	173 / 3e-46	AT3G54170	381 / 3e-125	FKBP12 interacting protein 37 (.1)
Lus10018089 [exp]	159 / 1e-42	AT5G14540	91 / 4e-19	Protein of unknown function (DUF1421) (.1)
Lus10032138 [exp]	128 / 2e-31	AT5G14540	204 / 4e-58	Protein of unknown function (DUF1421) (.1)
Lus10014549 [exp]	125 / 1e-30	AT5G14540	207 / 2e-59	Protein of unknown function (DUF1421) (.1)
Lus10033692 [exp]	75 / 5e-14	AT4G28300	392 / 1e-132	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Lus10031645 [exp]	72 / 4e-13	AT4G28300	392 / 2e-132	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Lus10039827 [exp]	68 / 7e-12	AT4G28300	377 / 9e-126	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Lus10018593 [exp]	68 / 8e-12	AT4G28300	376 / 1e-125	Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0214 [poplar] [flax]	UBA	PF07223 [poplar] [flax]	DUF1421	UBA-like domain (DUF1421)

Representative CDS sequence

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>Potri.T125008.1 pacid=42762245 polypeptide=Potri.T125008.1.p locus=Potri.T125008 ID=Potri.T125008.1.v4.1 annot-version=v4.1

ATGGATACTTCAAGGTACATGGATAAGCAAATCACCCAACTTTCCAAATCCCAGCCCTTCAATTTCTTGGACGATGATGATGAACAAGAAGAAGAAGAAG

AAAATGGAGATCACGGCTTCGAATTCAACACTTTTCGCTCTCTTTCAAAATCCCACAACAAAGTTCTTGATGGAACCAACCTCAGGGGTTGGAGCTCAAT

GGATTGCATTGATTCTGCAAAATTCTCCACTGAGAAAGTTGGGATTTTCAGCAATGCAGCATTGATTTTTGAGATTGATGTAAAGATGAAGGAGCATGCT

GACATATTGCTACACTCTGTGGAGTGTCTCAGCACTCGAGTGTCTCAATTGGAAAGTAGAACACACCAAATAGAAAATGTTGTTGATGATTTAAAGGAAT

CAATGGATTTTAATCAAGGGAAAACTGATGGAAAGCTAAGGGAAATAAAGAATATTCTTGTGGAGGTTCAGGGTGGTGTCCAAGATTTGAGAGATAAACA

AGATATAGCAGAGGCTCAGCTGCAACTGGCAAAGCTTCAAATGTCCAAAAATAACCAGCAAGTGGAAAAACTAAATGCTATTGTTAAAGCAGGTTGGAGT

CAAGAAGCACTGTCATCAGTCTCTCAGCAATCCCACCAGCTGCTTCCCATTCCAGGTGCTTCTCCACAACTTCTTGCTCCCTCTTCTAGTGTTACGAACC

TACCTCCTCAGATTCATCCTCCAGCAACATCTGTAGCAACAGCATCACAGCTTTCCACCCACCTGCTCCAGAACCAGACTGCTATCTCCTCTGTTCCACA

GCAAGAACCTTACAATCCAGCGCTAGTTCCTACTCCAGAAAGAATATATCAGCAATACCAGGTCCCTCCAGCTCAGCAGTCGCAATTAATACCCTATTAT

CACCAACCTTATCAACCAATGCCTCATTTTCCCCAAAACTTGCAGTTACCCGAACTGCCTCAAGTGCACCCAGCTTCCACCATGGTTAATCCTCAAGTCC

CAGGCCATCATTCTGAAGAAGTTCCTTGCACACCTTCTCATAGCATCTTTCAGCCACCTGGCAGGTCTCCACCTCTCCAACAGTATAACACGGGCTCTAC

TCAGCAGATCTATCCTCAACTTTCAAACAGGAATTATGTAGAGTCTAATTCTGCAAGTTTGCTACCACAAGGACTGCCACTACATGGGAAAACAAATATT

ACGGACTCCTATCGTTACGGTGCTTCTCCAAGAAACTATGGCAGTTCATCTATAAAACCATCGCAGCCCTTTCCATCTCCTACAGTCCTGGGCGGTGAAA

GCAATTACACACAATTGCCCACTGCCCGTATACTACCACATGCTATCCCAACTGCCTCTAATGTGGATGCTGGATCAGGATCAGGTTCTGGTGGGAGTGG

AAACAGGCGACCAGTTGATGATGTTATTGACAATGTTGCTGCAATGGGATTTCATAGAGACTTGGTGAGAGAAACAGTGATAAAATTGATGGAGAATGGG

CAGTCAGTTGACTTGAATGCAGTGCTGGATAAACTGATGAACAGTGGGTAA

AA sequence

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>Potri.T125008.1 pacid=42762245 polypeptide=Potri.T125008.1.p locus=Potri.T125008 ID=Potri.T125008.1.v4.1 annot-version=v4.1

MDTSRYMDKQITQLSKSQPFNFLDDDDEQEEEEENGDHGFEFNTFRSLSKSHNKVLDGTNLRGWSSMDCIDSAKFSTEKVGIFSNAALIFEIDVKMKEHA

DILLHSVECLSTRVSQLESRTHQIENVVDDLKESMDFNQGKTDGKLREIKNILVEVQGGVQDLRDKQDIAEAQLQLAKLQMSKNNQQVEKLNAIVKAGWS

QEALSSVSQQSHQLLPIPGASPQLLAPSSSVTNLPPQIHPPATSVATASQLSTHLLQNQTAISSVPQQEPYNPALVPTPERIYQQYQVPPAQQSQLIPYY

HQPYQPMPHFPQNLQLPELPQVHPASTMVNPQVPGHHSEEVPCTPSHSIFQPPGRSPPLQQYNTGSTQQIYPQLSNRNYVESNSASLLPQGLPLHGKTNI

TDSYRYGASPRNYGSSSIKPSQPFPSPTVLGGESNYTQLPTARILPHAIPTASNVDAGSGSGSGGSGNRRPVDDVIDNVAAMGFHRDLVRETVIKLMENG

QSVDLNAVLDKLMNSG

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125008 [exp]	0	1

Potri.T125008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125008 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125008 coexpression network