Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT5G35200	644 / 0	ENTH/ANTH/VHS superfamily protein (.1)
AT2G01600	451 / 3e-153	ENTH/ANTH/VHS superfamily protein (.1)
AT5G57200	408 / 2e-136	ENTH/ANTH/VHS superfamily protein (.1)
AT4G25940	400 / 3e-133	ENTH/ANTH/VHS superfamily protein (.1)
AT1G14910	400 / 8e-132	ENTH/ANTH/VHS superfamily protein (.1)
AT1G03050	225 / 4e-66	ENTH/ANTH/VHS superfamily protein (.1)
AT4G02650	215 / 4e-62	ENTH/ANTH/VHS superfamily protein (.1)
AT1G05020	202 / 5e-57	ENTH/ANTH/VHS superfamily protein (.1)
AT2G25430	143 / 3e-36	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
AT4G32285	132 / 1e-32	ENTH/ANTH/VHS superfamily protein (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.018G125284 [exp]	955 / 0	AT5G35200	646 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G065100 [exp]	849 / 0	AT5G35200	621 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.010G110000 [exp]	471 / 1e-161	AT2G01600	732 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.T124907 [exp]	413 / 2e-143	AT5G35200	357 / 4e-122	ENTH/ANTH/VHS superfamily protein (.1)
Potri.008G132100 [exp]	416 / 7e-140	AT2G01600	749 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G075800 [exp]	403 / 2e-134	AT2G01600	543 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.018G142800 [exp]	401 / 1e-133	AT5G57200	655 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.006G118100 [exp]	238 / 5e-71	AT1G03050	605 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Potri.002G224500 [exp]	215 / 3e-62	AT1G05020	500 / 2e-170	ENTH/ANTH/VHS superfamily protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10005184 [exp]	755 / 0	AT5G35200	702 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10038122 [exp]	752 / 0	AT5G35200	714 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10034610 [exp]	468 / 1e-159	AT2G01600	765 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10021796 [exp]	465 / 2e-158	AT2G01600	756 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10013469 [exp]	407 / 1e-135	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10007933 [exp]	408 / 3e-133	AT2G01600	758 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10025462 [exp]	396 / 2e-131	AT4G25940	685 / 0.0	ENTH/ANTH/VHS superfamily protein (.1)
Lus10003642 [exp]	388 / 4e-129	AT5G35200	380 / 2e-126	ENTH/ANTH/VHS superfamily protein (.1)
Lus10015335 [exp]	238 / 5e-70	AT4G25940	385 / 6e-126	ENTH/ANTH/VHS superfamily protein (.1)
Lus10035340 [exp]	194 / 8e-54	AT1G05020	489 / 1e-164	ENTH/ANTH/VHS superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0009 [poplar] [flax]	ENTH_VHS	PF07651 [poplar] [flax]	ANTH	ANTH domain

Representative CDS sequence

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>Potri.T125107.1 pacid=42776699 polypeptide=Potri.T125107.1.p locus=Potri.T125107 ID=Potri.T125107.1.v4.1 annot-version=v4.1

ATGTCAGGAGGTGGAACCCAAAACAGTTTGAGGAGAGCACTCGGTGCCCTCAAGGATACTACCACTGTTTCATTGGCCAAAGTCAATAGTGATTACAAGG

AATTGGATATTGCTATAGTGAAGGCCACAAATCACTATGAACGACCAGCAAAGGAAAGACACATTAGAGCTATTTTTGCTGCCGTTTCAGCTACTAGACC

TCGCGCTGATGTTGCATATTGCATCCATGCTCTTGCACGGCGTTTATCAAGGACACATAACTGGGCGGTTGCATTGAAAACTTTAATCGTTATTCATCGG

GCTTTGAGAGAAGTGGACCAGACGTTCCACGAGGAGATCATTAATTATGGAAGAAGCCGAAGCCATATGCTTAACATGGCCCATTTCAAAGATGATTCCA

GTCCAGATGCATGGGATTATTCTGCCTGGGTTCGCACCTATGCCTTATTTTTGGAGGAGAGGTTGGAATGCTTTCGCGTGTTGAAGTATGATGTTGAGAT

GGATCGACCTCGGACCAAAGATCTGGACACAGTTGAAATACTGGAGCAACTGCCAGCTTTGCAACAGCTTCTTTTCCGCATTCTTGGTTGTCAGCCACAA

GGGGCAGCAGCCAATAACTTTGTCATTCAGTTGGCACTCCAATTGGTTGCTTCCGAGAGCATTAGAGTTTATCAAGCTATAAATGATGCTACTGCCAATT

TGGTTGACAAGTTCTTCGAGATGCAGCGCCCTGATGCTGCAAAGGCTCTGGAAATTTATAGAAGGGCTTGTCAGCAGGCAGAGAGACTTTCAGAATTTTA

CGAGATATGTAAAAGCATGTATATTGGGCGTGGAGAAAAGTTTATAAAGATCGAGCAGCCTCCTTTATCATTCCTACAAACCATGGAAGAGTATGTGCGA

GATGCTCCAAGGGTGACAACAGCTCTGAGGGATCAGTTCGTTGATAATAAAATTGCTTCCCCTAAGGAAATCTTAGCCATAGAGTACAAGAAGGAACCAG

AAGTAAAGGAGGAACGGCCATCATCACCACCTCCACCTGAACCAGTGAAGGTGGAAGAGCCTGTTGCTCAACCACCTGATTTGTTGGGGTTGGATGATCC

TGTTCCAGTTGCTTCAGAGCTAGATGAGAAGAATGCCCTGGCTCTTGCAATTGTTCCAGTTGCTGAACAACAAAGTTCCCCTGTCCCAACACATGCAAAT

GGAACTACAGGCTGGGAGCTGGCGCTTGTCACGGCTCCTAGTTCAAATGAAAGTACCGCTGCTGCTAGCAAACTGGCTGGAGGGCTCGATAAACTTACAT

TAGACAGCCTCTATGATGATGCAATTAGAAGGAGCAATCAGCCTGTGAGCTACAATCCTTGGGAGCCAGTCCCAGTGGCTAATCCCATGATGCAAGCAGC

CGTACATGATCCTTTCTTTGCATCCAACACAGTTGCTGCACCACATTCAGTGCAAATGTCCCAAATGGCCAGCCAACAGCAAGCTTTCATGTTGCAGCAG

CAGCAGCAGCAGCAGCAGATGATGATGATGATGATGATGGGCCAGCAACAACAGCAACCTTCAAATCATTTTGGAAACACTTATGGAAGCAGTGTCCACC

CCTATGGCTCAGGTATGCCGCCTGTTCAAGCATACAATCCATACTCGGGCTGA

AA sequence

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>Potri.T125107.1 pacid=42776699 polypeptide=Potri.T125107.1.p locus=Potri.T125107 ID=Potri.T125107.1.v4.1 annot-version=v4.1

MSGGGTQNSLRRALGALKDTTTVSLAKVNSDYKELDIAIVKATNHYERPAKERHIRAIFAAVSATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHR

ALREVDQTFHEEIINYGRSRSHMLNMAHFKDDSSPDAWDYSAWVRTYALFLEERLECFRVLKYDVEMDRPRTKDLDTVEILEQLPALQQLLFRILGCQPQ

GAAANNFVIQLALQLVASESIRVYQAINDATANLVDKFFEMQRPDAAKALEIYRRACQQAERLSEFYEICKSMYIGRGEKFIKIEQPPLSFLQTMEEYVR

DAPRVTTALRDQFVDNKIASPKEILAIEYKKEPEVKEERPSSPPPPEPVKVEEPVAQPPDLLGLDDPVPVASELDEKNALALAIVPVAEQQSSPVPTHAN

GTTGWELALVTAPSSNESTAAASKLAGGLDKLTLDSLYDDAIRRSNQPVSYNPWEPVPVANPMMQAAVHDPFFASNTVAAPHSVQMSQMASQQQAFMLQQ

QQQQQQMMMMMMMGQQQQQPSNHFGNTYGSSVHPYGSGMPPVQAYNPYSG

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125107 [exp]	0	1

Potri.T125107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125107 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125107 coexpression network