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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT4G24670	487 / 8e-171	TAR2	tryptophan aminotransferase related 2 (.1.2)
AT1G70560	392 / 3e-134	CKRC1, WEI8, TAA1, sav3	WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
AT1G23320	387 / 2e-132	TAR1	tryptophan aminotransferase related 1 (.1)
AT1G34040	251 / 1e-78	ATMEPCT	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
AT1G34060	241 / 2e-74		Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.012G083300 [exp]	702 / 0	AT4G24670	489 / 1e-171	tryptophan aminotransferase related 2 (.1.2)
Potri.010G044500 [exp]	398 / 2e-136	AT1G70560	504 / 4e-179	WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Potri.008G187800 [exp]	398 / 2e-136	AT1G70560	477 / 1e-168	WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Potri.002G063800 [exp]	261 / 2e-82	AT1G34060	472 / 1e-164	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Potri.002G064000 [exp]	246 / 1e-76	AT1G34060	514 / 0.0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039944 [exp]	498 / 2e-175	AT4G24670	489 / 5e-172	tryptophan aminotransferase related 2 (.1.2)
Lus10027678 [exp]	471 / 6e-166	AT4G24670	449 / 7e-158	tryptophan aminotransferase related 2 (.1.2)
Lus10036846 [exp]	391 / 9e-134	AT1G70560	415 / 4e-144	WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Lus10018088 [exp]	397 / 3e-131	AT1G60780	632 / 0.0	HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1)
Lus10006199 [exp]	383 / 6e-131	AT1G70560	405 / 6e-141	WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Lus10028695 [exp]	236 / 2e-72	AT1G34060	474 / 4e-165	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10007085 [exp]	217 / 3e-65	AT1G34060	456 / 5e-158	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Lus10042085 [exp]	42 / 0.0001	ND	43 / 2e-08
Lus10042084 [exp]	0 / 1	AT4G24670	190 / 5e-60	tryptophan aminotransferase related 2 (.1.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0061 [poplar] [flax]	PLP_aminotran	PF04864 [poplar] [flax]	Alliinase_C	Allinase

Representative CDS sequence

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>Potri.T125108.1 pacid=42762250 polypeptide=Potri.T125108.1.p locus=Potri.T125108 ID=Potri.T125108.1.v4.1 annot-version=v4.1

ATGGCGAGGCTTTTCAGTGTTTTCTCATTAAGGAACTTACTGGTGCTGTCTCTAGCTCTTAACGTGAGCTTGATTTTGAGAGTGCTGTATGAGAAAGAGT

CTGGAGTCATTAGCGGTCTCTCTCTGGACAACAGGAGAGAGGCATTGAGGACTGATAGTATGCCTAGTGAGGCACATGCTACCCAGAGGGAACATCTTTC

TATGCGCTCTTCTTCTTCGTCTTCTTCTACAGTGGATAGCAATGGCAGGGACAGAGTAATCAATCTTGATCATGGCGATCCGACAATGTATGAGAGATAT

TGGCAACAGACGGGTGACAAATCCACCATTTTGATTCCTGGTTGGCAATCAATGAGCTACTTCTCTGATGCTGGGAGCCTGTGCTGGTTTTTAGAGCCAG

AGTTTGCCAAAGAGATATTTAGACTACACAAAGTAGTTGGCAATGCAGTCACCGAGGACCGCTACATTGTTGTTGGGACGGGTTCGACACAGCTTTATCA

AGCTGTATTATATGCACTCTCCCCCCTAGATGCAGCGGAACCCCTTAGTGTTGTATCTGCAGCTCCTTACTACTCTTCTTATCCATTAATCACTGACTGC

CTGAAGTCAGGGCTTTATAAATGGGCCGGTGATGCACAGAGTTTCAATAAAGAAGGACCGTATATTGAACTCGTTACCTCCCCTAACAATCCAGATGGGT

TTGTCAGGCAGTCTGTTGTCAACAAAAGTGGGGGCATCTTGGTTCATGATCTTGCATATTATTGGCCGCAATACTCGCCAATAGCTGCCGCCGCTGATCA

TGACATTATGCTCTTCACTGTGTCGAAAAGCACAGGACATGCTGGGATGCGCATTGGATGGGCTCTTGTCAAGGATGAAGAAGTAGCCAAAAAGATGGTG

AAATACGTAGAGCTCAACACGATCGGCGTGTCAAAGGATTCGCAGCTTCGAGCAGCTAAAGTGCTGCAAGTAGTGACTGATGGCTGCAAATATCCTCCCA

GCAAAGAAGGGTCCCTCTTTGACTTTGCTGCCCACCTCATGGAAGAGAGGTGGAAGTTATTAAGGGCCGCAGTCAGGCAAAGTGGTCTCTTCACTTTGCC

AGAGTTTCCCCCTGGATCGTGCAGGTTTCTCAACATCTCCTTCGCTCCTCGACCAGCTTTTGCATGGTTGAAGTGCGAAGCCCCTATAGAAGACTGCGAA

GCCTTTCTCCGATCTAACAACATCTTAACAAGAAGCGGTATACATTTTGGCGTTGGACCACAATATGTTAGGATAAGCATGCTAGATCGAGATGAAAACT

ATGATGAATTTGTAGAGAGATTGTCCACCATCCACCTGCGACAATCCATGCACGTAGATGAGACGGCGGAATAG

AA sequence

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>Potri.T125108.1 pacid=42762250 polypeptide=Potri.T125108.1.p locus=Potri.T125108 ID=Potri.T125108.1.v4.1 annot-version=v4.1

MARLFSVFSLRNLLVLSLALNVSLILRVLYEKESGVISGLSLDNRREALRTDSMPSEAHATQREHLSMRSSSSSSSTVDSNGRDRVINLDHGDPTMYERY

WQQTGDKSTILIPGWQSMSYFSDAGSLCWFLEPEFAKEIFRLHKVVGNAVTEDRYIVVGTGSTQLYQAVLYALSPLDAAEPLSVVSAAPYYSSYPLITDC

LKSGLYKWAGDAQSFNKEGPYIELVTSPNNPDGFVRQSVVNKSGGILVHDLAYYWPQYSPIAAAADHDIMLFTVSKSTGHAGMRIGWALVKDEEVAKKMV

KYVELNTIGVSKDSQLRAAKVLQVVTDGCKYPPSKEGSLFDFAAHLMEERWKLLRAAVRQSGLFTLPEFPPGSCRFLNISFAPRPAFAWLKCEAPIEDCE

AFLRSNNILTRSGIHFGVGPQYVRISMLDRDENYDEFVERLSTIHLRQSMHVDETAE

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125108 [exp]	0	1

Potri.T125108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125108 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125108 coexpression network