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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G13480	759 / 0	FY	Transducin/WD40 repeat-like superfamily protein (.1.2)
AT4G15900	114 / 2e-26	PRL1	pleiotropic regulatory locus 1 (.1)
AT5G23430	105 / 5e-23		Transducin/WD40 repeat-like superfamily protein (.1.2)
AT3G16650	100 / 4e-22		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G08390	100 / 1e-21		Transducin/WD40 repeat-like superfamily protein (.1)
AT5G25150	99 / 2e-21	TAF5	TBP-associated factor 5 (.1)
AT4G02730	96 / 2e-21	AtWDR5b	human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
AT5G67320	97 / 8e-21	HOS15	high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
AT2G41500	96 / 2e-20	EMB2776, LIS	LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
AT1G61210	96 / 6e-20	DWA3	DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G197900 [exp]	1011 / 0	AT5G13480	760 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.001G026800 [exp]	884 / 0	AT5G13480	726 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.010G012800 [exp]	112 / 6e-26	AT4G15900	731 / 0.0	pleiotropic regulatory locus 1 (.1)
Potri.010G255400 [exp]	105 / 5e-23	AT5G08390	927 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.008G002300 [exp]	104 / 7e-23	AT5G08390	1006 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1)
Potri.002G051900 [exp]	100 / 1e-22	AT4G02730	524 / 0.0	human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.006G045800 [exp]	97 / 8e-21	AT2G41500	614 / 0.0	LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Potri.018G020200 [exp]	97 / 1e-20	AT5G25150	984 / 0.0	TBP-associated factor 5 (.1)
Potri.006G263400 [exp]	96 / 3e-20	AT5G25150	1018 / 0.0	TBP-associated factor 5 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10026837 [exp]	825 / 0	AT5G13480	759 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10020214 [exp]	805 / 0	AT5G13480	738 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10006511 [exp]	112 / 7e-26	AT4G15900	753 / 0.0	pleiotropic regulatory locus 1 (.1)
Lus10037500 [exp]	110 / 3e-25	AT4G15900	752 / 0.0	pleiotropic regulatory locus 1 (.1)
Lus10021059 [exp]	108 / 3e-24	AT2G41500	706 / 0.0	LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Lus10041007 [exp]	107 / 6e-24	AT5G23430	721 / 0.0	Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10006916 [exp]	100 / 8e-23	AT4G02730	506 / 0.0	human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Lus10014674 [exp]	100 / 1e-22	AT4G02730	508 / 0.0	human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Lus10004167 [exp]	102 / 3e-22	AT2G41500	708 / 0.0	LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Lus10013452 [exp]	101 / 1e-21	AT1G50410	1003 / 0.0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0186 [poplar] [flax]	Beta_propeller	PF00400 [poplar] [flax]	WD40	WD domain, G-beta repeat

Representative CDS sequence

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>Potri.T125206.1 pacid=42773000 polypeptide=Potri.T125206.1.p locus=Potri.T125206 ID=Potri.T125206.1.v4.1 annot-version=v4.1

ATGAATTACGGTGATCCTCAACAACAGCAGCCACAGCACCAGCACCAGCAGCCACTACAACAACACCAGCACCAGCAGCCACAGCACCAGCACCAGCAGC

CACAACACCACCACCACCAACATATGCAACAGCAACCGCCTCCTGGTGGTGATTTTCATAGAGGGCAGCCACCGCCAATGATGCGACAACCCTCCGCTTC

ATCAACCACTCTTAACCCGCTTGATTACCACCACCATCCGCAGGCCGCCCCCGGTCCTCCTCCTCCTAAATACGAAGCTAATCATGGTGATGGTTACGGT

GGAAAAAGGATGAGGAAGCTTACGCAGAGGAGAGCAGTTGATTATACAAGCACGGTTGTTAGGTATATTCAGACTCGTATGTGGCAGTGGGACTTGAGGG

ACAGGACAGTATTGCAACATACCCCAGCAGCTGCGATCGATGTGTTGCCTCCAGTTGCCTATTCTGATAATCCATCAACAAGCTTTGCCACAAAGTTTGT

TCATACATCTCTAAACAAAAACCGTTGTTCGATAAATCGGGTTTTGTGGACTCCAAATGGGAAACGTCTAATCACAGGTTCTCAAAGTGGGGAATTCACC

CTTTGGAATGGACAGTCATTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGGTCTATGGTATGGAGCCACAATGACAATTGGATGGTCT

CTGGTGATGATGGTGGTTCAATTAAGTATTGGCAGAGCAACATGAATAATGTTAAGGTCAATAAATCTGCTCATAAAGAATCAGTGCGTGACTTAAGTTT

CTGCAGGACAGATTTGAAGTTCTGTTCATGCTCCGATGATACTACTGTTAAAGTTTGGGACTTTGCTCGGTGCCATGAAGAGCGTTCATTAACGGGCCAT

GGTTGGGATGTGAAGAGTGTTGATTGGCACCCTTCAAAATCTCTTCTGGTCTCAGGTGGGAAAGACAACCTAGTAAAACTCTGGGATGCTAAATCTGGAA

GAGAGCTTTGCTCATTTCATGGCCACAAAAATACCGTTCTTTGTGTCAAATGGAACCAAAATGGTAACTGGGTGCTGACTGCTTCAAAAGATCAAATCAT

CAAGCTTTATGATTTAAGGGCAATGAAGGAGCTTGAATCTTTCCGCGGACATCGGAAGGACGTGACTGCATTGGCTTGGCATCCATTCCATGAAGAGTAC

TTTGTTAGTGGGAGTTATGACGGATCCATTTTCCATTGGCTTGTGGGGCATGAAACCCCCCAGGTTGAAGTTTCCAGTGCTCATGATAATAGTGTTTGGG

ATCTTTCATGGCATCCTATTGGATATCTTCTTTGCAGTGGTAGCAATGATCACACAACAAAGTTTTGGTGTCAAAATAGGCCAGGAGACACTGCCCGTGA

TAAATTTAACGTGGGTCAAAACCAAGGTTATGGTGAGCAAAATCCTGCCCTTGGTGGCCGCTTCCCTGGCAATTTCCATGTACCTGAACCACCGATAACT

CCAGGACCATTTGCTCCTGGACTGACTCGAAATGAAGGAACTATTCCAGGTGTTGGAGCTGCAATGCCACTATCAATTACATCTCTTGATGCATCGCAGG

GAGAGCAGAGGCAGCCTCTTCCTGTTTCTATGCCCTTTGGAGGGCCTCCTCTTCCTCCTGGTCCACATCCGTCATTTCGTGCAGCCAATCAGCAGCAGGG

ATATCAGCAAAGTCCTCAGCAGCAGCAGCAACAGCAACCACTCCCTCAGCACATGCCTCCTTTGCCTATGCCGCCTCCAAACATGCAACAGCTACTGCCT

CCATCCCATGTACCCCTGCTTTCTCATCCCCATCTACCTCGCCCTCCTCAAATGCCTCCTCATGGCATGCCTTCACCAATCCCATCTTCAATGCCCGGAT

CTTTGCCTTCATCAATGCCTGGTCCAATGGGGATGCAAGGGACGATGAGTCAGATGGTACCTCTGTTGCCACAGGGCCATTTTATGGGCATGAATCCAAT

GCACTCAGGATCCTTGCCCACAAGTGCTGCCCCTCCAGTCGGCGGGGGCTTTCCAAATGGCCTGCCCAATATGCAGGGCCAATCAAATGCCACAGGGGGG

CAAATGTATCCACAGGGCGGTCCATTCAACCATCCTCAAGGTGGACAGATGCCAAGGATGCCTGGGTTTAATCCTTACCAGTCTGGAAACCAATCTGGTA

TGCCTCCACCACTACCACCTGGTCTCCCACCACATTCCCAGACACCTCAGTAG

AA sequence

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>Potri.T125206.1 pacid=42773000 polypeptide=Potri.T125206.1.p locus=Potri.T125206 ID=Potri.T125206.1.v4.1 annot-version=v4.1

MNYGDPQQQQPQHQHQQPLQQHQHQQPQHQHQQPQHHHHQHMQQQPPPGGDFHRGQPPPMMRQPSASSTTLNPLDYHHHPQAAPGPPPPKYEANHGDGYG

GKRMRKLTQRRAVDYTSTVVRYIQTRMWQWDLRDRTVLQHTPAAAIDVLPPVAYSDNPSTSFATKFVHTSLNKNRCSINRVLWTPNGKRLITGSQSGEFT

LWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQSNMNNVKVNKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCHEERSLTGH

GWDVKSVDWHPSKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDLRAMKELESFRGHRKDVTALAWHPFHEEY

FVSGSYDGSIFHWLVGHETPQVEVSSAHDNSVWDLSWHPIGYLLCSGSNDHTTKFWCQNRPGDTARDKFNVGQNQGYGEQNPALGGRFPGNFHVPEPPIT

PGPFAPGLTRNEGTIPGVGAAMPLSITSLDASQGEQRQPLPVSMPFGGPPLPPGPHPSFRAANQQQGYQQSPQQQQQQQPLPQHMPPLPMPPPNMQQLLP

PSHVPLLSHPHLPRPPQMPPHGMPSPIPSSMPGSLPSSMPGPMGMQGTMSQMVPLLPQGHFMGMNPMHSGSLPTSAAPPVGGGFPNGLPNMQGQSNATGG

QMYPQGGPFNHPQGGQMPRMPGFNPYQSGNQSGMPPPLPPGLPPHSQTPQ

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125206 [exp]	0	1

Potri.T125206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125206 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125206 coexpression network