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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G51940	336 / 7e-107		protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
AT3G21630	262 / 6e-79	LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
AT1G24030	189 / 2e-54		Protein kinase superfamily protein (.1.2)
AT1G61860	188 / 9e-54		Protein kinase superfamily protein (.1)
AT3G20530	188 / 1e-53		Protein kinase superfamily protein (.1)
AT5G38560	194 / 2e-53	AtPERK8	proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
AT4G02010	194 / 3e-53		Protein kinase superfamily protein (.1)
AT2G28590	187 / 6e-53		Protein kinase superfamily protein (.1)
AT3G24790	183 / 3e-52		Protein kinase superfamily protein (.1)
AT5G02800	183 / 5e-52	CDL1	CDG1-like 1, Protein kinase superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G081601 [exp]	1213 / 0	AT1G51940	337 / 5e-107	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Potri.008G187500 [exp]	672 / 0	AT1G51940	362 / 7e-117	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Potri.001G190200 [exp]	337 / 3e-107	AT1G51940	824 / 0.0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Potri.006G252600 [exp]	328 / 2e-104	AT1G51940	326 / 4e-103	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Potri.002G226600 [exp]	254 / 4e-76	AT3G21630	697 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Potri.014G156400 [exp]	252 / 3e-75	AT3G21630	678 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Potri.011G010000 [exp]	251 / 1e-74	AT3G21630	673 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Potri.014G143100 [exp]	197 / 5e-57	AT3G58690	573 / 0.0	Protein kinase superfamily protein (.1)
Potri.010G078700 [exp]	201 / 1e-56	AT2G23770	288 / 5e-89	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10004625 [exp]	594 / 0	AT1G51940	347 / 7e-111	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Lus10026689 [exp]	593 / 0	AT1G51940	348 / 4e-111	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Lus10027677 [exp]	539 / 0	AT1G51940	320 / 7e-101	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Lus10006841 [exp]	336 / 1e-106	AT1G51940	812 / 0.0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Lus10037586 [exp]	335 / 5e-106	AT1G51940	807 / 0.0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Lus10035301 [exp]	266 / 2e-80	AT3G21630	578 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Lus10030022 [exp]	256 / 4e-77	AT3G21630	692 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Lus10035302 [exp]	254 / 3e-73	AT3G21630	706 / 0.0	LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Lus10040050 [exp]	196 / 2e-56	AT3G20530	555 / 0.0	Protein kinase superfamily protein (.1)
Lus10019621 [exp]	193 / 1e-55	AT3G20530	536 / 0.0	Protein kinase superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0016 [poplar] [flax]	PKinase	PF00069 [poplar] [flax]	Pkinase	Protein kinase domain
CL0187 [poplar] [flax]	LysM	PF01476 [poplar] [flax]	LysM	LysM domain

Representative CDS sequence

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>Potri.T125208.1 pacid=42762244 polypeptide=Potri.T125208.1.p locus=Potri.T125208 ID=Potri.T125208.1.v4.1 annot-version=v4.1

ATGAAGATGGCTGCCCAAAACAACCGCCAATTCCATCTCCACCACCTTTATTTCTTAGCAATTATCCTTACTCATGTTCTCTCCTCCAATGTCTTCATCG

AGTCAAGCAGCACCATGTACCCCTTTAGTTGCTCTGACCAGGTTCAGAATTGTGATTCCTATCTATATCACATCTCCGAAGGCCTTTCCATTGAGCAAAT

AGCTTCTTTCTACTCAGTGAAATCATCCAATGTTGAGCCCATTACTCATGGCCTCAAACAAGACTATCTTGTATCAGTTCCATGCACTTGCAAGGATGTG

AATGGCACTCAAGGCTACTTCTACGATACCTTCTATAGTGTACAATCTGGTGACATATTTACCAATGTTACATGGGTTCTCTATAGTGGGCAAGCTTGGG

AGGTTCCAGGAGTGGAACGGCTATTTATTGCTGGAGATATGATTAGTGTGCATCTTGTATGTGGATGCTTAGAAGTAGAGGCTAAAGAGATTGTGACATA

TACAGTTCAGGAAAATGATACCCTAACAGGGATTGCAGAACTTTTATCTGCAGAACTGACTGGGATTGAGAATCTAAATGAAAGATTTACTCGAAATCCA

AACTTGATTGATGTCGGATGGGTTTTATTCGTTCCCAGAGAGAAGAATGGAATTCAAGCACCAAAACAAGGAAAGCAACACAATTTGGCAATAATCCTTG

GCACACTGTCAGCTGTGACTTTATTTTCAGTTTGTTCATTGCTGTTGTTCCTCCACAGAAGAAACAGAAACCATAAAAACAGAAAAGAAGACCCAGAAGT

TGTCAACAAAGCCCAAAGTCCCACGAGGACTTCCTTAAGGACTCACTTTCGTGAAAAGTACATAGAAGATGCAACCTTTGAATCCGAAAGACCAATTGTA

TATAGTTTGAAGGAGATAGATGAGGCCACAAGTCAATTCGACGAAAGCAGGAAAATTGGAGCGGGAGGATATGGGATTGTGTACATTGGTACTCTGAAAG

AAAGGGAAGTTGCAATTAAGAAAATGAAGTCTTCCAGATCAAAGGAATTCTACTCAGAGCTAAAAGTGTTGTGCAAGATACATCATATTAATGTGGTGGA

GCTGCTGGGATATGCAACAGGGGATAATCACCTCTATTTAGTATACGAGTATATTCAGAATGGATCACTCAATGATCACCTTCATGACCCTTTGCTAAAA

GGTCACTCGCCCCTTTCATGGCTTGCAAGAGCACAAATAGCACTAGACGCTGCACGAGGAATTGAATATATTCATGATCACACAAAAGCGCGATATATTC

ACCGTGATATAAAGACAAGTAACATTCTACTTGATAAGGGACTCGGAGCAAAGGTTGCAGATTTTGGACTGGCAAGATTGGTAGAAAGATCAAATGAAGA

AGATGCAGTAGCAACACGGCTGGTAGGCACGCCAGGTTACATTGCACCTGAATCTGTTCGTGAACTACAGATGACATCAAAAACTGATGTGTTTTCTTTC

GGAGTGGTCCTGGCAGAGCTAATAACTGGTCAGCGAGCGCTCGCACGCGACAACGGGCAACCGAACAAGATGAAAGTACTGGTAGCAGTTATGACAGCAA

TATTCCGAGATCAAGACCCGGAGACAGCTTTGGAGGCTAATATAGATGAAAACATGAAAGGAAGCTACCCAATGGATGAAGTTTACAAGATGGCAGAACT

ATCTACACATTGTATGAATGAAGACCCGACAAATCGACCGGAGATGCGAGAAATTGTCCAGGAACTTTGTAAAATCTTGATGTCCTCAATTGAGTGGGAA

GCTTCACTTAGAGGAAGCAGTCAAGTTTTCACCAGGTTATTCGATGGAAGATGA

AA sequence

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>Potri.T125208.1 pacid=42762244 polypeptide=Potri.T125208.1.p locus=Potri.T125208 ID=Potri.T125208.1.v4.1 annot-version=v4.1

MKMAAQNNRQFHLHHLYFLAIILTHVLSSNVFIESSSTMYPFSCSDQVQNCDSYLYHISEGLSIEQIASFYSVKSSNVEPITHGLKQDYLVSVPCTCKDV

NGTQGYFYDTFYSVQSGDIFTNVTWVLYSGQAWEVPGVERLFIAGDMISVHLVCGCLEVEAKEIVTYTVQENDTLTGIAELLSAELTGIENLNERFTRNP

NLIDVGWVLFVPREKNGIQAPKQGKQHNLAIILGTLSAVTLFSVCSLLLFLHRRNRNHKNRKEDPEVVNKAQSPTRTSLRTHFREKYIEDATFESERPIV

YSLKEIDEATSQFDESRKIGAGGYGIVYIGTLKEREVAIKKMKSSRSKEFYSELKVLCKIHHINVVELLGYATGDNHLYLVYEYIQNGSLNDHLHDPLLK

GHSPLSWLARAQIALDAARGIEYIHDHTKARYIHRDIKTSNILLDKGLGAKVADFGLARLVERSNEEDAVATRLVGTPGYIAPESVRELQMTSKTDVFSF

GVVLAELITGQRALARDNGQPNKMKVLVAVMTAIFRDQDPETALEANIDENMKGSYPMDEVYKMAELSTHCMNEDPTNRPEMREIVQELCKILMSSIEWE

ASLRGSSQVFTRLFDGR

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125208 [exp]	0	1

Potri.T125208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125208 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125208 coexpression network