Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34320 528 / 0 Protein of unknown function (DUF677) (.1) AT4G34330 386 / 7e-134 Protein of unknown function (DUF677) (.1) AT2G18630 374 / 2e-128 Protein of unknown function (DUF677) (.1) AT5G66675 357 / 2e-121 Protein of unknown function (DUF677) (.1) AT5G66670 244 / 1e-77 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT5G66660 240 / 6e-76 Protein of unknown function (DUF677) (.1) AT3G28270 150 / 5e-42 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28290 120 / 8e-31 AT14A Protein of unknown function (DUF677) (.1) AT3G28300 120 / 8e-31 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 99 / 6e-23 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G112430 [exp] 681 / 0 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 622 / 0 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.007G031200 [exp] 377 / 1e-129 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 367 / 6e-126 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.005G127300 [exp] 360 / 6e-123 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.005G127200 [exp] 358 / 2e-122 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.002G067300 [exp] 76 / 5e-15 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 56 / 1e-08 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 45 / 4e-05 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011295 [exp] 499 / 2e-177 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040489 [exp] 462 / 2e-163 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1) Lus10040334 [exp] 400 / 1e-138 AT2G18630 429 / 4e-150 Protein of unknown function (DUF677) (.1) Lus10023459 [exp] 389 / 3e-134 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.T125304.1 pacid=42802272 polypeptide=Potri.T125304.1.p locus=Potri.T125304 ID=Potri.T125304.1.v4.1 annot-version=v4.1 ATGGGAGGTCATGTGAGCAAGAGGCCAGCTGAAGCATCATCTTCTTCTATCAATCTCAACAACAATTTACAATACACGACTGGATTGAGCTCTTACGAGG CTGCTTGCCTGCTTGACAAGGACTTGCAGTCCTTTGACACCACCCTCCAAGCTCGGACCAATCATGTCATCAATACTCTTGCTGTCGGTGTTGAGGTCCG TGCACTTTCTTTTGATTCCTTGAAGGAAGTCACAGAATGCTTGTTGGAGATGAACCAAGAGGTTGTTAAGGTTATCTTGGAGTGCAAGAGAGACATATGG AAGAATCAAGAATTGTTTGAGCTTGTTGAGGAGTATTTTGAGAATAGCTTGCAGACTCTAGATTTCTGCGCTGCATTGGAGAAGTGCCTAAAGCGTGCCC GCGATAGCCAATTGCTGATTCTTGTCGCGCTTCAGCAATTCGAAGAGGAAAGTGAGGCAGGAGGGAGTAAGTATGTGAAGACCTTGGAGGAACTGAAGAG TTTCAAGGCAGCAGGTGATCCTTTCACGGAGGAATTCTTTCAAATCTTTCAATCTGTGTACAGGCAGCAGATAACGATGCTTGAGAAGCTACAACTTAGG AAGAATAAGCTTGACAAGAAGCTCAAGTGCATTCATGCTTGGAGGAAGGTTTCAAGTATAATATTTGTAGCTACTTTTGCTACTGTATTGATTTGCTCAG TTGTTGCTGCAGCCATGGCTGCCCCTCCTGTTGCTGCTGCTCTTGCTGCAGCATCATCAATCCCATTAGGCTCAATGGGGAAGTGGATTGATTCTATGTG GAAGAATTATGAAAATGCATTGAAGGGACAGAAGGAGGTGATTAGCACAATGCAAGTTGGTACTTATGTGGCCATAAAGGACCTTGACACCATTCGGGTT CTAATTAATCGCCTGGAGATTGAGATTGAAGCGCTAATGCAAACAACTGACTTTGCAATTGAGCATGATGCTGTGAAGCTTGCAATAGAGGAGATCAAGA AGAAGCTGGGGGTGTTCATGAAGAATGTCGAGGATTTGGGATTACAGGCTGATACATGCAGCCGTGATATCAGAAGGGCTCGGACTGTGGTTCTGCAACG GATCATTAAAAATCCCCAAAACTAG
AA sequence Show only first row Show all	>Potri.T125304.1 pacid=42802272 polypeptide=Potri.T125304.1.p locus=Potri.T125304 ID=Potri.T125304.1.v4.1 annot-version=v4.1 MGGHVSKRPAEASSSSINLNNNLQYTTGLSSYEAACLLDKDLQSFDTTLQARTNHVINTLAVGVEVRALSFDSLKEVTECLLEMNQEVVKVILECKRDIW KNQELFELVEEYFENSLQTLDFCAALEKCLKRARDSQLLILVALQQFEEESEAGGSKYVKTLEELKSFKAAGDPFTEEFFQIFQSVYRQQITMLEKLQLR KNKLDKKLKCIHAWRKVSSIIFVATFATVLICSVVAAAMAAPPVAAALAAASSIPLGSMGKWIDSMWKNYENALKGQKEVISTMQVGTYVAIKDLDTIRV LINRLEIEIEALMQTTDFAIEHDAVKLAIEEIKKKLGVFMKNVEDLGLQADTCSRDIRRARTVVLQRIIKNPQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125304 [exp]	0	1

Compare expression of checked genes

Potri.T125304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.