Gene [POPLAR] | FIBexDB

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G40420	108 / 5e-30	OLE2, PA23, OLEO2	oleosin 2 (.1)
AT3G27660	103 / 4e-28	OLE3, OLEO4	OLEOSIN 3, oleosin 4 (.1)
AT3G01570	102 / 6e-28		Oleosin family protein (.1)
AT4G25140	74 / 8e-17	OLE1, OLEO1	oleosin 1 (.1)
AT2G25890	72 / 1e-16		Oleosin family protein (.1)
AT5G51210	63 / 4e-13	OLEO3	oleosin3 (.1)
AT5G07550	51 / 8e-09	ATGRP19, GRP19	glycine-rich protein 19 (.1.2.3)
AT5G07540	45 / 3e-06	ATGRP16, ATGRP-6, GRP16	glycine-rich protein 16 (.1.2)
AT5G07530	46 / 4e-06	ATGRP17, ATGRP-7, GRP17	ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 17, ARABIDOPSIS THALIANA GLYCINE RICH PROTEIN 7, glycine rich protein 17 (.1.2)
AT5G07571	44 / 5e-06		Oleosin family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G081901 [exp]	245 / 2e-84	AT5G40420	108 / 5e-30	oleosin 2 (.1)
Potri.012G083400 [exp]	183 / 7e-60	AT5G40420	97 / 2e-25	oleosin 2 (.1)
Potri.001G345800 [exp]	111 / 6e-32	AT3G01570	140 / 6e-43	Oleosin family protein (.1)
Potri.017G071800 [exp]	107 / 5e-30	AT3G01570	130 / 4e-39	Oleosin family protein (.1)
Potri.003G150600 [exp]	67 / 7e-15	AT4G25140	124 / 3e-37	oleosin 1 (.1)
Potri.001G080000 [exp]	65 / 5e-14	AT4G25140	108 / 1e-30	oleosin 1 (.1)
Potri.006G234900 [exp]	65 / 1e-13	AT2G25890	113 / 1e-32	Oleosin family protein (.1)
Potri.012G059400 [exp]	57 / 8e-11	AT3G18570	113 / 4e-32	Oleosin family protein (.1)
Potri.018G057800 [exp]	56 / 2e-10	AT2G25890	91 / 5e-24	Oleosin family protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10028035 [exp]	120 / 8e-35	AT3G01570	139 / 8e-42	Oleosin family protein (.1)
Lus10003742 [exp]	118 / 3e-34	AT3G01570	142 / 1e-43	Oleosin family protein (.1)
Lus10014559 [exp]	102 / 9e-28	AT3G01570	159 / 1e-49	Oleosin family protein (.1)
Lus10032127 [exp]	100 / 5e-27	AT3G01570	162 / 4e-51	Oleosin family protein (.1)
Lus10031387 [exp]	76 / 7e-18	AT4G25140	164 / 1e-52	oleosin 1 (.1)
Lus10027161 [exp]	72 / 4e-16	AT4G25140	154 / 3e-48	oleosin 1 (.1)
Lus10010943 [exp]	75 / 6e-16	AT1G22400	535 / 0.0	ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Lus10039683 [exp]	71 / 6e-16	AT4G25140	159 / 2e-50	oleosin 1 (.1)
Lus10017460 [exp]	66 / 6e-14	AT4G25140	136 / 9e-42	oleosin 1 (.1)
Lus10028822 [exp]	62 / 6e-13	AT4G25140	146 / 3e-46	oleosin 1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF01277 [poplar] [flax]	Oleosin	Oleosin

Representative CDS sequence

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>Potri.T125308.1 pacid=42762257 polypeptide=Potri.T125308.1.p locus=Potri.T125308 ID=Potri.T125308.1.v4.1 annot-version=v4.1

ATGGCTGACTTTCGCCAACAACAGCAACAGCTGAGACCTGGTGGTCAAGGCACAGCGGGCATATTCCTCCCTGGAAAGGGTGCTTCAACTTCCCAGGTTT

TAGCTGTTGTGACCTTGTTGCCTGTTGGTGGCACCCTTCTCTTCCTTGCAGGTCTCACTCTTGTAGGGACACTTATTGGGCTAGCTGTGGCAACGCCACT

TTTTGTTATTTTTAGCCCAGCTTTGGTCCCTGCAGCTCTTGTCATAGGGCTGGGCGTGCTTGGATTCTTAACGTCTGGTGCTTTTGGGGTCACCGCACTC

TCATCGCTCTCATGGATGGCCAGCTATATTCGAAGCTTGATCAGAGGTCCCTTGCCACAGAAATTGGATCAAGCGAAACGGAGGACACGGGAAACGGCAG

GACAAGTGGGCCAGAAAGCTAGGGAGACGGGCCAGATTGTTCAGAGCAAGGCCCGAGAGGTGACAAAGGGTGGTCAAGAGGGTGGGAAGACATAA

AA sequence

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>Potri.T125308.1 pacid=42762257 polypeptide=Potri.T125308.1.p locus=Potri.T125308 ID=Potri.T125308.1.v4.1 annot-version=v4.1

MADFRQQQQQLRPGGQGTAGIFLPGKGASTSQVLAVVTLLPVGGTLLFLAGLTLVGTLIGLAVATPLFVIFSPALVPAALVIGLGVLGFLTSGAFGVTAL

SSLSWMASYIRSLIRGPLPQKLDQAKRRTRETAGQVGQKARETGQIVQSKAREVTKGGQEGGKT

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T125308 [exp]	0	1

Potri.T125308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T125308 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T125308 coexpression network