Plant FIBer expression Database

Potri.T125406 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13810 295 / 1e-100 Glutaredoxin family protein (.1)
AT3G57070 202 / 7e-63 Glutaredoxin family protein (.1)
AT2G41330 186 / 2e-56 Glutaredoxin family protein (.1)
AT5G58530 156 / 2e-46 Glutaredoxin family protein (.1)
AT5G39865 147 / 1e-41 Glutaredoxin family protein (.1)
AT3G28850 135 / 4e-37 Glutaredoxin family protein (.1)
AT4G10630 130 / 7e-36 Glutaredoxin family protein (.1)
AT5G03870 130 / 1e-35 Glutaredoxin family protein (.1)
AT5G06470 122 / 7e-34 Glutaredoxin family protein (.1)
AT1G64500 125 / 9e-34 Glutaredoxin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G198100
[exp]
538 / 0 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1)
Potri.001G026600
[exp]
459 / 1e-165 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1)
Potri.006G041800
[exp]
223 / 9e-71 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1)
Potri.016G038600
[exp]
217 / 2e-68 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1)
Potri.009G075600
[exp]
160 / 2e-48 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1)
Potri.001G280400
[exp]
156 / 1e-46 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1)
Potri.006G212700
[exp]
157 / 2e-45 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1)
Potri.008G072200
[exp]
152 / 2e-45 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1)
Potri.016G079400
[exp]
153 / 9e-44 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024164
[exp]
332 / 4e-115 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1)
Lus10039537
[exp]
332 / 4e-115 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1)
Lus10018025
[exp]
157 / 9e-46 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1)
Lus10001669
[exp]
154 / 5e-45 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
Lus10021353
[exp]
156 / 7e-45 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1)
Lus10017029
[exp]
155 / 1e-44 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1)
Lus10040949
[exp]
142 / 1e-41 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1)
Lus10042021
[exp]
145 / 2e-41 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1)
Lus10021255
[exp]
141 / 3e-41 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1)
Lus10013597
[exp]
140 / 7e-41 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF00462 Glutaredoxin Glutaredoxin
Representative CDS sequence
>Potri.T125406.1 pacid=42772999 polypeptide=Potri.T125406.1.p locus=Potri.T125406 ID=Potri.T125406.1.v4.1 annot-version=v4.1
ATGGCTGAATTTGAAAATAACCAGGAAATCACACCCAATTCGAAACCCACCACCAATAAAATGACCTCTAGTTCTATATTCAATAGGTCTCTTACAATTC
ATTCAACTTCAGTGACAAAGCCTTACCTTCAATCAACATCAGGATTCTACAATTCTTTTGAGTCCATGAAAGGAAAGGTCAAAAAGCTTCGGTCTTTGTT
TGAGTCCCCGAAACCGAATCCCAATGAATTGCAAATTCAAGCAACTAAAAAGCTACAATCTGTGAAATCAATGGGGCCTGATTATAATAGGTTCCCTGTT
AATGATAATAGAATTCGGTTGCCTGGTACTGAGGATAGGATTGTGGTGTATTTAACGAGCTTGCGAGGGATTCGGAGGACTTATGAGGATTGTTATGCGG
TGAAGATGATATTTAGAGGGTTTAGAGTGTGGGTTGATGAGAGGGATATTTCGATGGATTCAGCTTATAAGAAGGAGCTGCAAAGTGTGTTGGGAGAGAA
AAATGTGAGCTTGCCGCAGGTGTTTATAAGGGGGAATCATGTAGGTGGTGCTGAGGTGATTAAGCAAATGTTCGAGACGGGCGAAATGGCAAGGGTTCTT
GATGGGTTTCCAAGACGGCTGGCTGGGTTTGTTTGTGCAGGTTGTGGGGATGTGAGGTTTGTGCCATGTGGGAATTGTAGCGGAAGTAGGAAGTTGTTTG
ATGAAGATGAAGGGGTGCTTAAGAGATGCTTGGAATGTAATGAGAATGGATTGATTCGGTGCTCGGATTGCTGCTCGTGA
AA sequence
>Potri.T125406.1 pacid=42772999 polypeptide=Potri.T125406.1.p locus=Potri.T125406 ID=Potri.T125406.1.v4.1 annot-version=v4.1
MAEFENNQEITPNSKPTTNKMTSSSIFNRSLTIHSTSVTKPYLQSTSGFYNSFESMKGKVKKLRSLFESPKPNPNELQIQATKKLQSVKSMGPDYNRFPV
NDNRIRLPGTEDRIVVYLTSLRGIRRTYEDCYAVKMIFRGFRVWVDERDISMDSAYKKELQSVLGEKNVSLPQVFIRGNHVGGAEVIKQMFETGEMARVL
DGFPRRLAGFVCAGCGDVRFVPCGNCSGSRKLFDEDEGVLKRCLECNENGLIRCSDCCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T125406
[exp]
0 1

Potri.T125406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.