Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G61790	473 / 1e-169		Protein with RING/U-box and TRAF-like domains (.1)
AT4G27880	463 / 1e-165		Protein with RING/U-box and TRAF-like domains (.1)
AT3G58040	459 / 2e-164	SINAT2	seven in absentia of Arabidopsis 2 (.1)
AT2G41980	452 / 1e-161		Protein with RING/U-box and TRAF-like domains (.1)
AT5G53360	377 / 4e-133		TRAF-like superfamily protein (.1)
AT3G13672	224 / 3e-73		TRAF-like superfamily protein (.1.2)
AT5G37890	100 / 1e-24		Protein with RING/U-box and TRAF-like domains (.1)
AT5G37870	99 / 5e-24		Protein with RING/U-box and TRAF-like domains (.1)
AT5G37910	94 / 5e-22		Protein with RING/U-box and TRAF-like domains (.1)
AT5G37930	94 / 6e-22		Protein with RING/U-box and TRAF-like domains (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G198600 [exp]	643 / 0	AT3G61790	473 / 2e-169	Protein with RING/U-box and TRAF-like domains (.1)
Potri.001G026200 [exp]	571 / 0	AT3G61790	450 / 2e-160	Protein with RING/U-box and TRAF-like domains (.1)
Potri.002G171500 [exp]	478 / 2e-171	AT3G61790	558 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Potri.012G015500 [exp]	477 / 5e-171	AT4G27880	542 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Potri.014G099200 [exp]	476 / 7e-171	AT3G61790	551 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Potri.016G059700 [exp]	470 / 9e-169	AT3G58040	548 / 0.0	seven in absentia of Arabidopsis 2 (.1)
Potri.015G013000 [exp]	470 / 3e-168	AT4G27880	546 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Potri.006G194100 [exp]	468 / 1e-167	AT3G58040	560 / 0.0	seven in absentia of Arabidopsis 2 (.1)
Potri.003G215400 [exp]	431 / 4e-153	AT3G58040	471 / 4e-169	seven in absentia of Arabidopsis 2 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10002761 [exp]	577 / 0	AT3G61790	462 / 1e-164	Protein with RING/U-box and TRAF-like domains (.1)
Lus10016348 [exp]	571 / 0	AT3G61790	459 / 7e-163	Protein with RING/U-box and TRAF-like domains (.1)
Lus10022405 [exp]	471 / 3e-168	AT4G27880	553 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Lus10018110 [exp]	471 / 3e-168	AT4G27880	553 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Lus10004001 [exp]	465 / 3e-166	AT3G61790	525 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Lus10030248 [exp]	459 / 7e-164	AT3G61790	514 / 0.0	Protein with RING/U-box and TRAF-like domains (.1)
Lus10039202 [exp]	443 / 6e-158	AT3G58040	488 / 1e-175	seven in absentia of Arabidopsis 2 (.1)
Lus10013739 [exp]	441 / 3e-157	AT3G58040	493 / 6e-178	seven in absentia of Arabidopsis 2 (.1)
Lus10009111 [exp]	57 / 2e-09	AT5G37930	134 / 5e-38	Protein with RING/U-box and TRAF-like domains (.1)
Lus10028535 [exp]	57 / 3e-09	AT5G37930	134 / 7e-38	Protein with RING/U-box and TRAF-like domains (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0389 [poplar] [flax]	TRAF	PF03145 [poplar] [flax]	Sina	Seven in absentia protein family

Representative CDS sequence

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>Potri.T126006.1 pacid=42772958 polypeptide=Potri.T126006.1.p locus=Potri.T126006 ID=Potri.T126006.1.v4.1 annot-version=v4.1

ATGGCATCAAGCAATCTGTTTTTTGATGACATCCGAAATAAACCTGAGGTTATTGATCCTCCTCAAAATGAAGACTTGACAGATATTGGTGAAAGTGTAA

ATGATCCTGCTCAGACAGCTCTAAAACCTAACGTGACTGTGTCTAGCAGTGTTCGTGAATTACTGGAGTGTCCTGTGTGCTTAAATGCCATGTATCCTCC

AATTCACCAGTGTTCAAATGGCCACACATTATGTTCTGGTTGCAAGCCCAGGGTTCAAAACCGATGCCCCACTTGCAGGCACGAACTCGGCAACATTAGA

TGTCTTGCACTAGAGAAAGTTGCTGCATCTCTTGAACTTCCATGTAAATATCAGAGTTTTGGGTGCATAGGCATATACCCTTATTACAGCAAGCTAAAAC

ATGAATCCCAATGTGTTTTTAGACCATATAACTGCCCATATGCTGGATCAGAATGCACAGTTATTGGTGATATTCCTTATCTGGTGGCCCATTTGAAAGA

TGATCACAAAGTTGACATGCATAATGGCAGTACTTTCAATCACAGATATGTCAAATCAAATCCACACGAAGTTGAGAATGCAACATGGATGCTGACGGTC

TTTAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCATTCCAGCTTGGGATGGCCCCGGTCTACATAGCATTCCTACGGTTTATGGGGGATGACA

ATGAGGCAAAGAACTATAGTTACAGTCTTGAAGTGGGTGGTGGTGGGAGGAAGATGATATGGCAAGGGGTACCAAGGAGCATAAGGGACAGCCACCGAAA

GGTTCGAGACAGTTTTGATGGTCTGATCATTCAACGCAACATGGCCCTTTTCTTCTCTGGTGGGGATAGGAAGGAATTGAAGCTTAGGGTGACTGGTCGA

ATTTGGAAAGAACAGTGA

AA sequence

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>Potri.T126006.1 pacid=42772958 polypeptide=Potri.T126006.1.p locus=Potri.T126006 ID=Potri.T126006.1.v4.1 annot-version=v4.1

MASSNLFFDDIRNKPEVIDPPQNEDLTDIGESVNDPAQTALKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVQNRCPTCRHELGNIR

CLALEKVAASLELPCKYQSFGCIGIYPYYSKLKHESQCVFRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTV

FSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGGGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGR

IWKEQ

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T126006 [exp]	0	1

Potri.T126006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T126006 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T126006 coexpression network