Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G14470	575 / 0		NB-ARC domain-containing disease resistance protein (.1)
AT3G14460	489 / 4e-149		LRR and NB-ARC domains-containing disease resistance protein (.1)
AT3G50950	204 / 6e-54	ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (.1.2)
AT1G59218	184 / 5e-47		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58848	184 / 5e-47		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58807	182 / 2e-46		Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
AT1G58602	171 / 6e-43		LRR and NB-ARC domains-containing disease resistance protein (.1.2)
AT1G72920	157 / 1e-42		Toll-Interleukin-Resistance (TIR) domain family protein (.1)
AT1G72900	155 / 6e-41		Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)
AT1G72940	154 / 1e-40		Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.T127106 [exp]	1721 / 0	AT3G14470	594 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200500 [exp]	1719 / 0	AT3G14470	594 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126306 [exp]	1649 / 0	AT3G14470	585 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126706 [exp]	1628 / 0	AT3G14470	565 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.T126806 [exp]	1343 / 0	AT3G14470	587 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200200 [exp]	1338 / 0	AT3G14470	634 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.001G029300 [exp]	845 / 0	AT3G14470	676 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.005G007001 [exp]	817 / 0	AT3G14470	647 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Potri.003G200800 [exp]	813 / 0	AT3G14460	509 / 7e-157	LRR and NB-ARC domains-containing disease resistance protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039509 [exp]	774 / 0	AT3G14460	613 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10024173 [exp]	773 / 0	AT3G14460	681 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10039540 [exp]	768 / 0	AT3G14470	727 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Lus10007261 [exp]	722 / 0	AT3G14460	654 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10005321 [exp]	578 / 0	AT3G14460	607 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10026109 [exp]	525 / 1e-162	AT3G14470	598 / 0.0	NB-ARC domain-containing disease resistance protein (.1)
Lus10026132 [exp]	521 / 2e-159	AT3G14460	594 / 0.0	LRR and NB-ARC domains-containing disease resistance protein (.1)
Lus10002736 [exp]	352 / 6e-109	AT3G14470	317 / 1e-98	NB-ARC domain-containing disease resistance protein (.1)
Lus10016316 [exp]	349 / 3e-100	AT3G14470	494 / 6e-156	NB-ARC domain-containing disease resistance protein (.1)
Lus10005218 [exp]	348 / 3e-100	AT3G14470	379 / 2e-113	NB-ARC domain-containing disease resistance protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0023 [poplar] [flax]	P-loop_NTPase	PF13191 [poplar] [flax]	AAA_16	AAA ATPase domain
CL0173 [poplar] [flax]	STIR	PF13676 [poplar] [flax]	TIR_2	TIR domain

Representative CDS sequence

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>Potri.T126506.1 pacid=42772961 polypeptide=Potri.T126506.1.p locus=Potri.T126506 ID=Potri.T126506.1.v4.1 annot-version=v4.1

ATGGCGTCTTCTTCTTCTTCGTCTAGACCTGGTTGGGATTACGATGTATTTCTAAGTTTTAGAGGTGAAGATACTCGCAAAAATTTTACGGATCATCTTT

TCACTGCTTTACAGAAAGCAAAAGTCCGTACATTTCGAGATGACGACGAACTTCGTATAGGTGAAGAAATCTCCTTACAACTCCCCAAAGCAATACAAGA

ATCCAAGATTTCTATAGTGGTTTTCTCCAAGGGCTATGCTTCCTCCACTTGGTGTCTTGATGAACTTGAAAAGATTCTTGATTGCAAACACACAACTGGT

CAGATTGTTATACCTGTTTTCTATGATATTGATCCTTCTGATATTAGAAAACAGACGGGGAGTTTTGCTGAAGCCTTTGATAAGCATGAAGAACGTTTTA

AGGAAGAAATGGAGAAGGTCCATAAGTGGAGAAAAGCTCTCGTGGAGGCTGCAGATTTATCTGGGCTGGATCCTCACAGTATCGCAAATGGGCATGAATC

AAAATTAATTCAAAAGATTGTCGAAGTAGTTTCAAGTAAATTGAATCCCAGATTTTTGTCTGACGATAGGCCGCTGAAGAGGTTGAAGACAACAATGATA

TCTGGTGGTGGGCTGCTTGACGATGCTGAGGAGAAGCAGATAACAAATACATTTGTGCGGGATTGGCTGGCCGAGTATAAAGACGCTGTCTATGAGGCCG

AAGACTTCTTGGATGAGATTGCTTATGAAGCTGAAGCTCAAACCTTCATTAACCCACCTGGAATAATGGGGTTGAGAGAGATAGAAGAAAAATCAAGAGG

CCTCCAGGAGAGTCTAGATTACTTAGTAAAACAAAAGGATGCCCTTGGTTTGATCAACCGCACTGGAAAAGAACCATCATCAACTAAAAGACCAACAACT

TCTCTGGTGGATGAACGTCGTGTTTATGGTAGAGATTATGACAGGGAAGCAATACTGAAGTTGCTTGTATCAGATGATGCAAATGGAGAAAACCCAGGTG

TTGTTCGCATAGTGGGCATGGGCGGGGTTGGTAAAACCACGCTTGCTCAGCTTGTGTACAATCACAGCGAAGTACAGAGGTGCTTCAATCTCAAAGCTTG

GGTTTGTGTTTCAGAAGATTTCAGTGTTTCAAAGTTAACCAAGGTTATCCTTGAGGAGGTCGGCTCAAAGTCTGATTCTGGGAGTCTGAATCAGCTCCAG

ATTCAGTTGAAGGAGAGGTTTCGGGAAAATAAATTTTTGCTTGTTTTAGATGATGTATGGGAAGAAAATTATGCTGAATGGGACACGTTGCTTACACCCT

TGAAATCTGGAGCACAAGGGAGTAAGATTCTTGTGACAACACGCAATGAAAGGGTAGCATCAGTCATGTCAACTGTTCAAACTCGTCACCTAAAAGAATT

GACGGAAGACAGCTGCTGGTTCTTGTTTGCCAAACATGCATTCGGTGATGAAAATCCCATTGCGCAAGAAGAGTTAAAAAAAATTGGTAGAGCAATAACG

AAAAAGTGTAAAGGCCTGCCTCTAGCTGCAAAATCACTCGGAGGTCTGCTATGCAACGAAAGAGAAGTCGAGGAGTGGCGGGATATTTTGGAAAGCAATC

TATGGGATTTACCCAAAGACAATATCCTCCCAGCTTTGAGATTAAGTTATCTTTATCTCGTGCCACATCTGAAGCAATGTTTTGCTTATTGTGCCATATT

TCCAAAAGACTATTCATTTCGAAAGGATGAATTAGTGCTCCTGTGGATGGCAGAGGGCTTCTTGGTCCGCTCTGCAGTAGATGATGAGATGGAAAAAGCA

GGTGCTAAGTGCTTTGATGATCTCTTGTCAAGGTCGTTTTTCCAGCAATCAAGTGCCTCTCGCTCATCATTTGTGATGCACGATCTCATGCATGACTTGG

CTACACATGTGTCCGGTCAATTTTGCTTCAGCTCCAGTTTGAGGGGAAATAATTCTTCCAAGGCCACCAGAAGGACTCGACATTTATCACTCGCAGTAGA

TACGGAAGACACGGATGGTGAAGATACCGAAGATGGAGATACGGAAGGTGTTTTTTCAAGCACAATATTAGAAAACATCCGTGAAGCCCAACATCTACGC

ACATTCCGAACTTCTCTAGACAATCAGATGTGTCCTCCCGAATTTGATAAGATCTTTCAGTCAACACATTGTCGCCTACGAGTGATATCGTTGTCTAATT

GTGCCGGTGTAGCTAAGATGCTTTGTTCAATTAGCAAGTTGAAGCATTTGCGGTATTTGGATCTTTCCTGGTCAGATTTAGTAACGTTGCCTGAAGAAGT

GAGTGCTCTTCTCAATTTGCAAACGTTGATCTTGAAAAGGTGCCAACAACTTGCTAGTCTACCTGATCTTGGAAATTTGAAGTATTTACGACATCTGAAT

CTTGAAGCAACAAGAATAGAAAGGTTGCCTGAATCTCTGGAAAGGTTAATCAACTTGCGGTATCTTAACATCAAATACACGCCTTTGAAAGAGATGCCAC

AATATATAGGTCAACTGGCAAAGCTCCAAACGTTGACTGACTTTCTCGTGGGAAGACAGAGTGAGACTAGCATTAAAGAATTGGGAAAGCTACGACATCT

ACGGGGAGAACTTCATATTGGGAACCTTCAAAATGTGGTGGATGCTCGGGATGCTGTTGAGGCAAATTTGAAAGGTAGAGAGCACCTTGATGAGCTGAGG

TTTACATGGGATGGTGACACTCATGACCCGCAACACGTGACAAGCACACTTGAGAAATTAGAGCCAAATAGAAATGTGAAGGATCTTGAGATTGATGGCT

ATGGAGGTGTAAGGTTTCCGGAGTGGGTAGGAAAGTCCTCTTTCTCGAATATAGTGTCTTTGAGGCTCAGTAGATGTACAAACTGCACCTTCTTACCACC

GCTCGGGCAATTAGCTTCTTTAGAGCGTCTCTCAATTGAAGCATTCGATAAAGTTGAGATTGTGGGGTCTGAGTTCTATGGGAATTGTACTGCTATGAAG

AAGCCATTTGAATCCCTCAAAACATTACGGTTTGAAGGAATGCCAGAGTGGCGCGAGTGGATTTCAGACGAAGGCAGCCGGGAAGGCTTCCCTCTTCTAG

AGGAGCTTTTAATCCAAGAATGCCCGAACCTTGCAAAGGCCCTACCATGTCACCACCTTCCACGTGTAACAAGTCTTACAATTCGTGGATGTAAGCAGCT

CGCGACTCCACTTCCTAGGTTTCCGGAGTGGGTAGGAGAGTCCTATTTGTCAAATATAGTGTCCTTGAAGCTCATTAGATGTACAAACAGCACCTCCTTA

CCACCGCTCGGGCAATTAGCTTCTTTAGAGCGTCTCTCAATTGAAGCATTCGATAAAGTTGAGATTGTGGGCTCTGAGTTATATGGGAATTGTACTGCTT

TGAAGAAGCCATTTGAATCCCTCAAAACATTATCTTTTAGAAGGATGTCAGAGTGGCGCGAGTGGATTTCAGACGAAGGCAGCCGGGAAGCCTTCCCTCT

TCTAGAGGAGCTTTTAATCGAAGAATGCCCGAACCTTGCAAAGGCCCTACCTTGTCACCACCTTCCACGTGTAACAAGTCTTACAATCGGTGGATGTGAG

CAGCTCGCGACTCCACTTCCTAGGTTTCCTGGGTTGCTCTCTCTCATTGTTTTTGATTTGCACTCCCTAGAGTCCCTACCCGAGGAAATTGATCAAATGG

GTTGTTCACCCTCTGATTTAGGGAAAATTATAATCCACCGCTGCGCTTCTCTCAAAGGCGTCGCACTGGACTTGCTCCCCAAGTTAAATTTTCTTCGTAT

TCTTGACTGTCCAGATCTGGAATCACTATGTGCAAATGAAAGACCTCTCAATGATCTCACCTCTCTCCATTCTTTGGAAATCGAGGGGTGCCCTAAATTA

GTTTCATTTCCCAAAGGAGGGTTACCTGCTCCAGTCTTGACACAACTTGATTTATATGATTGCAAAAACTTGAAGCAGTTGCCTGAGAGTATGCCTTCCC

TCCTCCCATCCCTTAACCGTTTGGGAATATATGGTTGTTCAGAAGTTGAGTTGTGTCCAGAAGGGGTTTTCCCTCCACATTACAATTACTTTGGATTCGT

AATTGCAACAAACTCATTGCAGGCCGCATGCAATGGGGCTTGCTAA

AA sequence

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>Potri.T126506.1 pacid=42772961 polypeptide=Potri.T126506.1.p locus=Potri.T126506 ID=Potri.T126506.1.v4.1 annot-version=v4.1

MASSSSSSRPGWDYDVFLSFRGEDTRKNFTDHLFTALQKAKVRTFRDDDELRIGEEISLQLPKAIQESKISIVVFSKGYASSTWCLDELEKILDCKHTTG

QIVIPVFYDIDPSDIRKQTGSFAEAFDKHEERFKEEMEKVHKWRKALVEAADLSGLDPHSIANGHESKLIQKIVEVVSSKLNPRFLSDDRPLKRLKTTMI

SGGGLLDDAEEKQITNTFVRDWLAEYKDAVYEAEDFLDEIAYEAEAQTFINPPGIMGLREIEEKSRGLQESLDYLVKQKDALGLINRTGKEPSSTKRPTT

SLVDERRVYGRDYDREAILKLLVSDDANGENPGVVRIVGMGGVGKTTLAQLVYNHSEVQRCFNLKAWVCVSEDFSVSKLTKVILEEVGSKSDSGSLNQLQ

IQLKERFRENKFLLVLDDVWEENYAEWDTLLTPLKSGAQGSKILVTTRNERVASVMSTVQTRHLKELTEDSCWFLFAKHAFGDENPIAQEELKKIGRAIT

KKCKGLPLAAKSLGGLLCNEREVEEWRDILESNLWDLPKDNILPALRLSYLYLVPHLKQCFAYCAIFPKDYSFRKDELVLLWMAEGFLVRSAVDDEMEKA

GAKCFDDLLSRSFFQQSSASRSSFVMHDLMHDLATHVSGQFCFSSSLRGNNSSKATRRTRHLSLAVDTEDTDGEDTEDGDTEGVFSSTILENIREAQHLR

TFRTSLDNQMCPPEFDKIFQSTHCRLRVISLSNCAGVAKMLCSISKLKHLRYLDLSWSDLVTLPEEVSALLNLQTLILKRCQQLASLPDLGNLKYLRHLN

LEATRIERLPESLERLINLRYLNIKYTPLKEMPQYIGQLAKLQTLTDFLVGRQSETSIKELGKLRHLRGELHIGNLQNVVDARDAVEANLKGREHLDELR

FTWDGDTHDPQHVTSTLEKLEPNRNVKDLEIDGYGGVRFPEWVGKSSFSNIVSLRLSRCTNCTFLPPLGQLASLERLSIEAFDKVEIVGSEFYGNCTAMK

KPFESLKTLRFEGMPEWREWISDEGSREGFPLLEELLIQECPNLAKALPCHHLPRVTSLTIRGCKQLATPLPRFPEWVGESYLSNIVSLKLIRCTNSTSL

PPLGQLASLERLSIEAFDKVEIVGSELYGNCTALKKPFESLKTLSFRRMSEWREWISDEGSREAFPLLEELLIEECPNLAKALPCHHLPRVTSLTIGGCE

QLATPLPRFPGLLSLIVFDLHSLESLPEEIDQMGCSPSDLGKIIIHRCASLKGVALDLLPKLNFLRILDCPDLESLCANERPLNDLTSLHSLEIEGCPKL

VSFPKGGLPAPVLTQLDLYDCKNLKQLPESMPSLLPSLNRLGIYGCSEVELCPEGVFPPHYNYFGFVIATNSLQAACNGAC

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T126506 [exp]	0	1

Potri.T126506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T126506 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T126506 coexpression network