Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT3G54500	355 / 2e-113	unknown protein
AT5G64170	97 / 6e-21	dentin sialophosphoprotein-related (.1.2)
AT3G12320	50 / 2e-06	unknown protein

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.003G200600 [exp]	1115 / 0	AT3G54500	298 / 3e-93	unknown protein
Potri.001G025100 [exp]	979 / 0	AT3G54500	325 / 4e-102	unknown protein
Potri.T126906 [exp]	741 / 0	AT3G54500	156 / 4e-41	unknown protein
Potri.T126406 [exp]	674 / 0	AT3G54500	191 / 6e-55	unknown protein
Potri.T126606 [exp]	502 / 2e-175	AT3G54500	191 / 2e-56	unknown protein
Potri.003G200300 [exp]	329 / 1e-109	AT3G54500	108 / 8e-28	unknown protein
Potri.001G205800 [exp]	91 / 8e-19	AT5G64170	334 / 6e-106	dentin sialophosphoprotein-related (.1.2)
Potri.001G031800 [exp]	56 / 5e-08	AT5G06980	75 / 7e-15	unknown protein
Potri.003G193800 [exp]	50 / 3e-06	AT3G12320	66 / 5e-12	unknown protein

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039553 [exp]	484 / 2e-162	AT3G54500	316 / 3e-98	unknown protein
Lus10024170 [exp]	474 / 2e-158	AT3G54500	305 / 5e-94	unknown protein
Lus10015846 [exp]	104 / 4e-23	AT5G64170	225 / 8e-66	dentin sialophosphoprotein-related (.1.2)
Lus10009319 [exp]	100 / 1e-21	AT1G01860	417 / 4e-137	PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Lus10024129 [exp]	58 / 1e-08	AT3G12320	80 / 8e-17	unknown protein
Lus10005384 [exp]	56 / 5e-08	AT3G12320	79 / 1e-16	unknown protein
Lus10008671 [exp]	53 / 4e-07	AT3G12320	65 / 1e-11	unknown protein
Lus10026150 [exp]	53 / 6e-07	AT5G06980	66 / 4e-12	unknown protein

PFAM info

Representative CDS sequence

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>Potri.T127206.1 pacid=42772988 polypeptide=Potri.T127206.1.p locus=Potri.T127206 ID=Potri.T127206.1.v4.1 annot-version=v4.1

ATGTTTGATTGGAACGACGAAGAGCTTACGAACATAATATGGGGTGAGGCTGATGATAGTGATGACCATATCGTGCCATATCCAGAGGCAAGTGAAGATT

ATTGCAAGAAAAAGGAATCGAATGAAGAAGCTAGCACCATTAAATCTAGTGAGCAGAAGGCACCTGGGGCTAAAGTTGATACTGATGGCAGAAAGCTGGA

GAGCATTTCGAATGTTGACACAAGTGAAGGAACTTCTTCCTTAGGACTTGACATGGACCGATGGCCTAACTTGTCCTCATCTAATGCTGCCAAAACTGAG

CAGGATTCCTTGGAAACTTCAATCTCTAACAATTTAACTGACATTACCAAACTTGATTCATCAGCAGATCATCTTGATAAGGACACTGAGATTTTTCAAA

ATTCCCATGAAGGTAAAGAGCAAGGTGATTTTGTTGATTATGGCTGGGCTAGCATTGGAAGCTTTGATGATCTTGATCGAATTTTTAGCAATGATGACCC

AATATTTGGCAATGTAAATCTTGGTAATGCGGATGAGCTATGGTCTTCTTCTAAAGATATAACTAACAGCCCGGTAAAGCCCTTTCCAATATCTGTGGCT

TCGAGAGAAGAGTATGCACAAGAAGAGGACCGGCTGTTTACCCTTGGGTATGGAAAAATGAACGATCCTGCATCTCATGGTCTGCAGAATACTCAGGCAA

GCCTTGATCATGTAGAATATGATGAAGCTGAAAACAAGCCTATACTGAAGGAGCAGACAGATTTGGCTGTTGTGGGAAAGAACACGGCGGCTAACTCTCA

ACTGACGGAAGAAAATGGTGCTTTGCCAAATGAATTGGCAAACAAGACTTACAGGCAAAAGAAGATCTTGAAAGGTCGGGAAAAACTGGAAGAAAAAGGT

GAACTGAAATCATCCCAAGATTTTTATGGAAACTGGACTTCATCTGGAATCCCAGCCTGTCAGCTTAAGAATCATTTTGCACCCCAAATTATGCAATCTT

CTCCCCCTTCAATTCTCAGCCAACAGAAGCAGCTACAGGGTTCCGAGCAGTTGCAGTACCAGCAGATATCCAATCCATTTGTGGCCCCTTCTGCATACGG

AAGTATTACAATTCCATATTCTATGCCTGTGTTGTCCCACATTCAGTCTGGGGATTTTAAGCATCAACCTTTAGCTTCTGGTTATGAAGTTTCTTCAGTT

TCTTCAGGCAATGCAAATCCTATAAACAAGTTAGCTGACTGTCCAGTGAAACCCCAGAGAATGACACCTCAGGAAAAGATTGAAAAATTAAGGAGGCGGC

AACAAATTCAGGCAATGCTTGCCATTCAGAAACAGCAGCAGCAGCTTGTTCATCAAAAGTGTTCCCAAGAAAATCAAATTCAGCATGTTGAAGGAGCTGA

CCTTGAAGTAGAGGATCTAAGTACACTTGCTTCATTTGACCCAAACTCACCTATTGAGCAAGATGATTCCAATACAATCTCTCTGGCGGTTAATGATTAT

TCAATGGAGGACACGGTACTCTACAGGCTTCAAGATATTATTTCAAAGTTGGATGTCAGAATTAGACTTTGTATTCGGGATAGCTTGTTCCGGCTGGCTC

AAAGTGCAATGCAAAGGCATTATGCTAGTGATACTGGCAGCACAAACAATAGTAGCAGGGACGAACAAGTTGCTGCAAAAGAGGAAACCAGCAGTCAAAG

AAGGGTGGTTAAGATGCCTGAGGTGGAAACAGAGACCAATCCCGTAGACCGGACTGTGGCTCATTTACTGTTTCATAGACCGATGGATATTCCTGGGAAG

CATCCTGATACACCTGAATCACCTTTTTCAACTAAGCTCCCGTGTGAGCACAAGACAATGGGCCTAGCAAAGCTGTCAACGGCAAGCCTGCCTGAGACTC

CAAAAAGTAAACCAAACTTTTCGCAAAAGGGGTCTCAACTTTCTAGTCTCTTGACCAATGCTCAGGCTGTCAGTCAGTGTAAAAGCAATCCTTGCTTAAA

CGCTTCAGAGGATGCATCAAACAATGGGCCTGCAGATGAAGGAGCTAGGGAGGTTAAAGCCTCTCAATGA

AA sequence

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>Potri.T127206.1 pacid=42772988 polypeptide=Potri.T127206.1.p locus=Potri.T127206 ID=Potri.T127206.1.v4.1 annot-version=v4.1

MFDWNDEELTNIIWGEADDSDDHIVPYPEASEDYCKKKESNEEASTIKSSEQKAPGAKVDTDGRKLESISNVDTSEGTSSLGLDMDRWPNLSSSNAAKTE

QDSLETSISNNLTDITKLDSSADHLDKDTEIFQNSHEGKEQGDFVDYGWASIGSFDDLDRIFSNDDPIFGNVNLGNADELWSSSKDITNSPVKPFPISVA

SREEYAQEEDRLFTLGYGKMNDPASHGLQNTQASLDHVEYDEAENKPILKEQTDLAVVGKNTAANSQLTEENGALPNELANKTYRQKKILKGREKLEEKG

ELKSSQDFYGNWTSSGIPACQLKNHFAPQIMQSSPPSILSQQKQLQGSEQLQYQQISNPFVAPSAYGSITIPYSMPVLSHIQSGDFKHQPLASGYEVSSV

SSGNANPINKLADCPVKPQRMTPQEKIEKLRRRQQIQAMLAIQKQQQQLVHQKCSQENQIQHVEGADLEVEDLSTLASFDPNSPIEQDDSNTISLAVNDY

SMEDTVLYRLQDIISKLDVRIRLCIRDSLFRLAQSAMQRHYASDTGSTNNSSRDEQVAAKEETSSQRRVVKMPEVETETNPVDRTVAHLLFHRPMDIPGK

HPDTPESPFSTKLPCEHKTMGLAKLSTASLPETPKSKPNFSQKGSQLSSLLTNAQAVSQCKSNPCLNASEDASNNGPADEGAREVKASQ

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T127206 [exp]	0	1

Potri.T127206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T127206 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T127206 coexpression network