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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT1G10240	789 / 0	FAR1_related	FRS11	FAR1-related sequence 11 (.1)
AT5G28530	471 / 1e-156	FAR1_related	FRS10	FAR1-related sequence 10 (.1)
AT4G38180	261 / 6e-76	FAR1_related	FRS5	FAR1-related sequence 5 (.1)
AT4G15090	208 / 1e-56	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
AT2G27110	202 / 2e-54	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2.3)
AT3G22170	201 / 2e-54	FAR1_related	FHY3	far-red elongated hypocotyls 3 (.1.2)
AT1G76320	196 / 4e-53	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)
AT1G52520	191 / 2e-51	FAR1_related	FRS6	FAR1-related sequence 6 (.1)
AT3G06250	186 / 2e-49	FAR1_related	FRS7	FAR1-related sequence 7 (.1)
AT5G18960	177 / 2e-46	FAR1_related	FRS12	FAR1-related sequence 12 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.008G108800 [exp]	1613 / 0	AT1G10240	788 / 0.0	FAR1-related sequence 11 (.1)
Potri.002G199300 [exp]	1074 / 0	AT1G10240	825 / 0.0	FAR1-related sequence 11 (.1)
Potri.004G227600 [exp]	818 / 0	AT1G10240	1199 / 0.0	FAR1-related sequence 11 (.1)
Potri.014G167000 [exp]	502 / 2e-168	AT5G28530	966 / 0.0	FAR1-related sequence 10 (.1)
Potri.016G007300 [exp]	481 / 3e-160	AT5G28530	819 / 0.0	FAR1-related sequence 10 (.1)
Potri.004G209000 [exp]	266 / 1e-77	AT4G38180	1163 / 0.0	FAR1-related sequence 5 (.1)
Potri.009G170100 [exp]	265 / 5e-77	AT4G38180	1145 / 0.0	FAR1-related sequence 5 (.1)
Potri.005G257600 [exp]	259 / 2e-75	AT4G38180	891 / 0.0	FAR1-related sequence 5 (.1)
Potri.011G145800 [exp]	258 / 1e-74	AT4G38180	1003 / 0.0	FAR1-related sequence 5 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10031825 [exp]	162 / 2e-42	AT1G76320	656 / 0.0	FAR1-related sequence 4 (.1.2)
Lus10010073 [exp]	53 / 8e-07	AT1G64260	155 / 3e-39	MuDR family transposase (.1)
Lus10038037 [exp]	45 / 0.0002	AT1G64260	149 / 8e-38	MuDR family transposase (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0274 [poplar] [flax]	WRKY-GCM1	PF03101 [poplar] [flax]	FAR1	FAR1 DNA-binding domain
CL0274 [poplar] [flax]		PF04434 [poplar] [flax]	SWIM	SWIM zinc finger
CL0219 [poplar] [flax]	RNase_H	PF10551 [poplar] [flax]	MULE	MULE transposase domain

Representative CDS sequence

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>Potri.T171101.1 pacid=42766858 polypeptide=Potri.T171101.1.p locus=Potri.T171101 ID=Potri.T171101.1.v4.1 annot-version=v4.1

ATGCGCTCTGCTCCCCTTCCGTTTAATCACCCGCCACTTTCAGTTGCTCGCAGGTCTGATTGTAAAAATTGGTTAGGAATGTCAGAGGGAACAAATATGG

TGATGGGGTCTTCTGAGGATGGGACAGATATATCTCAAGATGACAAGGGCACCACGGAAGAAACACCTGAAGACGCGATATTGTTACGACAGACTTCAGT

AAACCTTGTCCCTTTCATTGGCCAAAGGTTTGCATCCCAAGATGCTGCTTATGAATTTTATTGCAGTTTTGCAAAGCAATGTGGCTTTTCAATCAGGCGT

CACCGTACTCGTGGAAAGGATGGAGTTGGTCGAGGAGTCACGAGAAGGGATTTCACCTGCCATCGTGGTGGCTATCCACAGATGAAACTATCTGAAGATG

GAAAGATGCAAAGGAATCGCAAGTCAACACGTTGTGGCTGCCAAGCATTTATGCGTATTGTGAAGCGGGCAGATTTTGATGTCCCTGAATGGCGTGTTAC

GGGCTTTAGCAATATCCACAACCATGAAATGTTCAAATTGAATGAAGCGCACCTCCTTCCTGCCTCTTGTACCATGTCTCCAGATGACAAGAGTCGCATT

TGCATTTTTGCAAAAGCTGGAATGTCGGTGCGACAGATGTTACGATTAATGGAGCTAGAGAAAGGTGTGAAGCTGGGATGCTTGCCATATACAGAAATAG

ATGTGAGAAACCTACTACTGTCTTTCAGAAATGTTAATCAAGACAATGATGCGATTGATCTTATTGCAATGTGCAAGAAACTGAAAGATGAAGATCACAA

CTTCAAATATGATTTCAAAATTGATTGCAACAACAGGCTAGAGCATATTGCATGGTCTTATGCTTCATCTGTTCGATTATACGAGGCATTCGGTGATGCA

GTGGTTTTTGACACAACCCACCATTTGGATGCCTATGACATGTGGTTAGGCATTTGGGTTGGAGTAGATAATCATGGGATGACTTGTTTTTTCAGTTGTG

TACTTCTGCGTGAAGAAAATATGGAATCTTTTTCTTGGGCATTGAAGGCATTTGTGAACTTCATGAATGGAAAGGCTCCCCAAACCATAATAACTGACCA

GAACATGTGGTTGAAAGAGGCTATTGCTATTGAAATGCCTGACACTAAACATGCCTTTTGCATATGGCACATCATTTCAAAGTTCTCAGATTGGTTTTCT

ATACTGCTTGGATCATGTTATGATGACTGGAAAGCTGAGTTTCTCCGACTCTACAATCTGGAATCCGTACAAGATTTTGAGGAAGGATGGAGTGAAATGG

TTGAGAAATATGAGCTTCATGCAAATAAGCACATAACTAGTTTATATGCATTTCGTTCATTTTGGGCATTATCATTTTTGAGGAATTACTTCTTTGGAGG

AACGATGGATGTATGTCAGTCTGGCTCAATTACTGCTTTCATTCAGCGATTTTTGAGTGCACAGTCTCGGCTAGATTATTTTGTAGATGAACTGGCTGAT

ATTGTTGATTTCAAGCCAGAGTTAACACAAAAGCTTCATAAAGTTTACCTGAAAACAGGTTCACCCATTGAATCACATGCAGCTTCTGTTCTTACTCCAT

ATGCCTTTGGTAAATTCCAGGAAGAGCTCGTGTTAGCTCCACAGTATGCATCTTTTCCAGTAGATGAGTATTGTTTTCAAGTCAGACACCATACTCAGAT

TAGTGGTGGCTGCAAAGTCATTTGGGATTCTTGTCAAGGGAATATCAGCTGTAGCTGCAGTTGGTTTGAATATTCAGGCATCCTCTGCAGACATGTTCTT

CGTGTTCTGTCAACCAATAACTGTTTCCAAATACCAGACAACTATCTACCCACTCGATGGCAGTGTGTTAGTTCATCTTCCACTTCAAGGATGCATTCTG

AGAAAATCCAGTTACTGGAATCCATGGCTTCTACACTTATGGCAGAATCGGTTGAAACAGAGGAACGCCTTGATGTTGCTTGCGAGCAAATTTCCATGGT

ATTATCACATATTAGGGACCTTCCTACACAGACACACGGTGAAAGTGCATACAACTGCCCACCAGACTCCCTGATTTTACCAGAGGTAGAAGATTCTGGT

GGAATAGGTAACTTTACTATTGAGAATCCTGATGATGCAATCACTCTAGCAAAGCTAAAAGATAGACAGCCCAGAGTTGGAGTTGATATTTCTAGAAAAA

GAAGGCATCATTCTGGTCCTTGCTGTGGGCATTTTGGACATGATGCAACAGATTGTCCAATGACGAGAAGAGATCAAATGAATGGCACTACTCTAGGATA

CTTGTAG

AA sequence

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>Potri.T171101.1 pacid=42766858 polypeptide=Potri.T171101.1.p locus=Potri.T171101 ID=Potri.T171101.1.v4.1 annot-version=v4.1

MRSAPLPFNHPPLSVARRSDCKNWLGMSEGTNMVMGSSEDGTDISQDDKGTTEETPEDAILLRQTSVNLVPFIGQRFASQDAAYEFYCSFAKQCGFSIRR

HRTRGKDGVGRGVTRRDFTCHRGGYPQMKLSEDGKMQRNRKSTRCGCQAFMRIVKRADFDVPEWRVTGFSNIHNHEMFKLNEAHLLPASCTMSPDDKSRI

CIFAKAGMSVRQMLRLMELEKGVKLGCLPYTEIDVRNLLLSFRNVNQDNDAIDLIAMCKKLKDEDHNFKYDFKIDCNNRLEHIAWSYASSVRLYEAFGDA

VVFDTTHHLDAYDMWLGIWVGVDNHGMTCFFSCVLLREENMESFSWALKAFVNFMNGKAPQTIITDQNMWLKEAIAIEMPDTKHAFCIWHIISKFSDWFS

ILLGSCYDDWKAEFLRLYNLESVQDFEEGWSEMVEKYELHANKHITSLYAFRSFWALSFLRNYFFGGTMDVCQSGSITAFIQRFLSAQSRLDYFVDELAD

IVDFKPELTQKLHKVYLKTGSPIESHAASVLTPYAFGKFQEELVLAPQYASFPVDEYCFQVRHHTQISGGCKVIWDSCQGNISCSCSWFEYSGILCRHVL

RVLSTNNCFQIPDNYLPTRWQCVSSSSTSRMHSEKIQLLESMASTLMAESVETEERLDVACEQISMVLSHIRDLPTQTHGESAYNCPPDSLILPEVEDSG

GIGNFTIENPDDAITLAKLKDRQPRVGVDISRKRRHHSGPCCGHFGHDATDCPMTRRDQMNGTTLGYL

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T171101 [exp]	0	1

Potri.T171101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.T171101 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.T171101 coexpression network