Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58650 234 / 6e-65 unknown protein AT5G26910 189 / 2e-50 unknown protein AT3G05750 176 / 2e-45 unknown protein AT1G67040 87 / 5e-17 unknown protein AT1G74160 46 / 0.0001 unknown protein AT5G51850 44 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108600 [exp] 1803 / 0 AT3G58650 234 / 6e-65 unknown protein Potri.010G140900 [exp] 1470 / 0 AT3G58650 235 / 4e-65 unknown protein Potri.005G019700 [exp] 577 / 0 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 520 / 9e-171 AT5G26910 371 / 6e-115 unknown protein Potri.017G116000 [exp] 97 / 3e-20 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 93 / 6e-19 AT1G67040 339 / 2e-102 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037725 [exp] 818 / 0 AT5G26910 276 / 4e-80 unknown protein Lus10029857 [exp] 344 / 2e-104 AT3G58650 345 / 2e-105 unknown protein Lus10016854 [exp] 258 / 2e-76 AT3G58650 134 / 2e-33 unknown protein Lus10020689 [exp] 162 / 8e-41 AT5G26910 350 / 2e-107 unknown protein Lus10017607 [exp] 68 / 2e-11 AT1G67040 179 / 7e-47 unknown protein Lus10033565 [exp] 66 / 1e-10 AT1G67040 236 / 3e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.T171201.1 pacid=42766855 polypeptide=Potri.T171201.1.p locus=Potri.T171201 ID=Potri.T171201.1.v4.1 annot-version=v4.1 ATGGGAATTGAGAAAGAAGGTTCTAAAAGTGGAGGATACGTGGGTGGTTTTTTTCAGTTGTTTGATTGGACTGCAAAATCTAGGAAAAAGTTGTTTTCAA GCAAGTCAGATTTACCAGAACGTTCAAAACAAGGAAAGAGAAGTGATGGGAGCTTGCCAATGACTCGGCTTCATCTGATGGATGATGATGAAAATGGAGC AGAGTCGGGTATTAGAGGGGGCAGTGATTATAGCTGTGCTTCATCGGTAACTGATGATGATGGATATGGAGCTAGGGCCCCTGGGGTAGTAGCCAGGCTC ATGGGATTGGACTCCATGCCAACATCTAATTTATCAGAGCCCAATTCTACACCTTCTTTTGACACTCAATCTCTTCGAGATGCTTCTCGTGGCAGTAGAA ATTTTGATTACTACCAGGATCATCAAATCGCATACTCAGGAAATCTGCTTGACAAGGAGGATCGCCCTCCTAGAAACTTCGAGGAGTCTAAGTCTCATAA GGTCCTGAGCAGGCCTATTGAAAAGTTTCAAACTGAAATCCTGCCTCCTAAGTCGGCCAAATCGATTCCAATTACCCACCATAAACTTTTATCTCCAATC AAGAGTCCTGGTTTCATTCCGAACAAAACTGCTGCTCACATAATGGAAGCAGCTGCAAAAATTATTGAGCCGGGTCCCCAAGCAGCAGCCAAACCCAAAA TGCCTGCTGTTGGGTCTTCTTCAGTACCACTGAAAGTTCGGGATCTTAAAGAAAAACTGGAGGTTGCTCAGAAAATGCCTCTGGCTGGGTCCTCTTCAGC AGCCTTGAGAACTCGAGAACCAAAAGAGAAAGTGGAAGTTTCTCATAAAACTTTGAGACTTGCAGAAACTTCTCGAAGACCAGTTGAGTCAAATGCTGCC AAGCATCTAAAGGGGCAGTCTTTGAACAAAAGCTGGAATGGATCAGATGATACATCTTGCAGGGCTTTTTCTGAGACTGATGAAGGTTCTTCTAGCTCAA AGACTAAGGGAAAGTCTATCTCACTTGCAATCCAAGCAAAGGTCAATGTTCAGAGAAGAGAAGGTTTGAATTCAAGTAGCCGTCAAGGCTGTGTAGGCCA GAAAGAACTGAGAGAGGTTTCATCAAGCCAGTCCTTCAAGTGCCAACCTAATGTCCAAAAGAGTTTGCAAAAAAGATCTCCAGTACAGAATACATCTGGT GTGCTTAGGCAGAATAACCAGAAACAAAATTGCATAATGGATAAAGACAAATTGCCTTCAAAGCCCTTGGTTTCCAAACTGCAGGGTAAAAGAGTTCTGT CTGGGAATCCTCCTGTGAGGCACAAAACTTCTGGTAAGCCTTTTGGCTCCAAAAATGGATCTAGGAAGCTGGACTTGGATTTGAGAGAAGGCGAGAAGGG GAATTCTAACTATAGTATGGCGAATAATCCCAGGAAGAAGCGATCAATTGATGGAAATTTGCATGTTGAGAAAAACCAGGTTGTTGATAACAAGCTGATT GACAGAAATCGGAAGGCTGTTGAACCTACTCCAGTTATTGACAGGCCCTTTAGTTGGGCAGAAGAAAGCAAAAGGAAAGGCATGGATGTTGTCTCGTTTA CATTCACAGCCCCCTTGACACGGTCTATGCCTGGTTCAGAAACACCTACTCAGGCTGTACAGAAAAATAGTGGTTCTTGTATGGATAATTGTAGCAAGAG ATTGTTGCTTGACACAGATAGTATGAAGCTATCTTCAGTGGGATATAATGTGATTGGAGGGGATGCTTTGAGTTCTCTTTTGGAACAAAAGTTAAGGGAA TTGACTAAAGGTGTCGAGTCCTCTAGTTCTATATCCACTTTTAGTTCAGGCGGCGCTGCACCAAGGTTACATGATAACAAGGATCAAAGTTTCTCGTGCA TAGATAAATCAGATAGCTGCTATGATTCTCCCTCGGCCTTATTCTTCACTGATCCTGCAGCTCTCAGATTGAAACAAACTTTTCAGGGAGTTGATGAGAT GGACTGTAGCAGCAAATCAAATGATTCCAGACAGCTGCTTGATTGTAGACGTCCTAGTCCAGTCTCTGTTCTTGAACATTCTTTTTCAACTGAAAGTAGC AGCTCTTTGGACAGTATGGATAGTTGCAGCACAGAAGGGAACAAGCATTGTTCATCCATTCAAACCCAGGAAGTTCTTAGTTTGAGCTCTACAAAGAGGG TTCATTTTGTAGATGCTGACATGGAGTTATCAGATTCTGCTTCTTCAACATCAACTGGAACGGTGGCTAGAAAACATTCAATCATGTTAGCTGTGACAGG CCTTGTGAGATCAAAAAAGTGGGAAGTACAATATGTGGAGAAGATACTATGCAATATCGAATCGATGTTTCAGGACTTGGCATTAGGTCGGGCTTCCGAG ATCATAAACCCTCATCTCTTCCATCAGCTGGAAAGGAAAAAAATTATGCTTGAAAGTGATGATGTTGATGCTAGGCTAGAGCGGAAAGTATTATTTGATT GTGCAAGCGAATGCTTGGATTTGAGATGCAGACGATATGTTGGTGGTGGATACAAAGCATGGGTGAAAGGGACAACAATGGTGAGAAGAAAGGAATGGCT AGCTGAAGATATGTACAAGGAGATCTCTGAATGGAGCAGGATGGGGGATTGTATGGTGGATGAACTTGTAGAAAAGGACATGAGCAGTCAGTATGGAAGG TGGCTGGACTTTGAAGTAGATGCATATGCACTTGGAGTGGAGTTTGAAAGCCAAATATTTAATTCATTGGTTAATGAAGTTGTTGCTGATATCTTGCGGT TTTGA
AA sequence Show only first row Show all	>Potri.T171201.1 pacid=42766855 polypeptide=Potri.T171201.1.p locus=Potri.T171201 ID=Potri.T171201.1.v4.1 annot-version=v4.1 MGIEKEGSKSGGYVGGFFQLFDWTAKSRKKLFSSKSDLPERSKQGKRSDGSLPMTRLHLMDDDENGAESGIRGGSDYSCASSVTDDDGYGARAPGVVARL MGLDSMPTSNLSEPNSTPSFDTQSLRDASRGSRNFDYYQDHQIAYSGNLLDKEDRPPRNFEESKSHKVLSRPIEKFQTEILPPKSAKSIPITHHKLLSPI KSPGFIPNKTAAHIMEAAAKIIEPGPQAAAKPKMPAVGSSSVPLKVRDLKEKLEVAQKMPLAGSSSAALRTREPKEKVEVSHKTLRLAETSRRPVESNAA KHLKGQSLNKSWNGSDDTSCRAFSETDEGSSSSKTKGKSISLAIQAKVNVQRREGLNSSSRQGCVGQKELREVSSSQSFKCQPNVQKSLQKRSPVQNTSG VLRQNNQKQNCIMDKDKLPSKPLVSKLQGKRVLSGNPPVRHKTSGKPFGSKNGSRKLDLDLREGEKGNSNYSMANNPRKKRSIDGNLHVEKNQVVDNKLI DRNRKAVEPTPVIDRPFSWAEESKRKGMDVVSFTFTAPLTRSMPGSETPTQAVQKNSGSCMDNCSKRLLLDTDSMKLSSVGYNVIGGDALSSLLEQKLRE LTKGVESSSSISTFSSGGAAPRLHDNKDQSFSCIDKSDSCYDSPSALFFTDPAALRLKQTFQGVDEMDCSSKSNDSRQLLDCRRPSPVSVLEHSFSTESS SSLDSMDSCSTEGNKHCSSIQTQEVLSLSSTKRVHFVDADMELSDSASSTSTGTVARKHSIMLAVTGLVRSKKWEVQYVEKILCNIESMFQDLALGRASE IINPHLFHQLERKKIMLESDDVDARLERKVLFDCASECLDLRCRRYVGGGYKAWVKGTTMVRRKEWLAEDMYKEISEWSRMGDCMVDELVEKDMSSQYGR WLDFEVDAYALGVEFESQIFNSLVNEVVADILRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.T171201 [exp]	0	1

Compare expression of checked genes

Potri.T171201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.