Plant FIBer expression Database

Potri.T171301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49340 470 / 1e-163 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
AT3G12060 421 / 5e-143 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
AT5G06700 420 / 6e-142 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
AT1G60790 388 / 2e-130 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
AT5G20590 370 / 4e-124 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
AT3G62390 327 / 2e-107 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
AT5G19160 295 / 6e-95 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
AT3G06080 291 / 1e-93 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
AT3G11570 257 / 7e-81 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
AT5G06230 253 / 3e-80 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G108500
[exp]
827 / 0 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Potri.006G193900
[exp]
420 / 1e-141 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Potri.016G059300
[exp]
410 / 3e-138 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Potri.001G010900
[exp]
405 / 9e-137 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Potri.010G043300
[exp]
394 / 2e-132 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Potri.006G071500
[exp]
370 / 6e-124 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Potri.018G133000
[exp]
369 / 3e-123 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Potri.002G195800
[exp]
330 / 8e-108 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Potri.009G072800
[exp]
283 / 3e-91 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037726
[exp]
430 / 9e-148 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Lus10021066
[exp]
416 / 3e-140 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Lus10013035
[exp]
394 / 1e-132 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Lus10029126
[exp]
375 / 8e-126 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Lus10011932
[exp]
365 / 1e-122 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Lus10027637
[exp]
362 / 4e-121 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Lus10004159
[exp]
326 / 6e-106 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Lus10002430
[exp]
319 / 5e-104 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Lus10034041
[exp]
298 / 3e-96 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
Lus10034039
[exp]
288 / 2e-92 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0264 SGNH_hydrolase PF13839 PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
CL0264 PF14416 PMR5N PMR5 N terminal Domain
Representative CDS sequence
>Potri.T171301.1 pacid=42766849 polypeptide=Potri.T171301.1.p locus=Potri.T171301 ID=Potri.T171301.1.v4.1 annot-version=v4.1
ATGGCACCTTTCAAGAACCTTTTCACCACTTCCATTAACATCTCAAGAACCCTATCTTTCCCTTTACCAAGATCAAGAACCCACCGTTTAGCCATTGCCC
TTCTCCTTCTTTCGTTATTCTTCTTCTCCTCTACATCACTAACCAACCAATTGCCGTCTTTTTTAACTGCATCTTCTCTTGCTTCTAGCATTCTTTTTGC
AGCAAACTATATTTCTCCATTCTCTTCAATCACATCTTCAAGAGCATGTTTAGTCTCTGACTCAACCGATAACTGCACACTCTCTTCTGTTACTGCAATG
GAGAGAACTCGCATGAATCCAAGAAAAGAAGAAGAAATTGATGATGTTATTGCAGGCCTTAGTTCTTGCGATATATTTAATGGGAATTGGGTTCTTGATG
ATTCTGATCCTATTTACCAACCTGGGTCTTGCCCTTTTTTAGATGATGCCTTCAACTGTTTCAATAACGGAAGGCCTGACTTGGACTATCTTCGATATCG
ATGGAAACCTCATGGATGCCACATTCCAAGGTTTGATGGGAGACAGATGTTGCGAATGTTGAGAGGGAAGAGAATGGTGTTTGTGGGGGACTCGTTGAAT
AGGAATATGTGGCAATCTTTGGTATGTGCATTGAGAGAATCAGTGGAGAATAAGAGCAGAATCTTTGAAATTGAGGGTCGGCGAGAGTTCAGGGCTAGAG
GCTTCTACTCTTTCAACTTCGTAGATCATAATTGCTCAATAGACTTTGTAAAATCGCCATTCCTTGTTCAAGAATGGCGAAGCTCAGACAGGCGTGGAAA
TCGAAGAGAAAGACTCAGGCTTGACATGATCCAAACCCCTTCTTTCAATTACCATGATGCTGATATAATCATCTTCAACACCGGTCACTGGTGGACGCAC
CAGAAAACATACAGAGGCAAAAATTACTTCCAAGAAGGCAGGAAAGTCTATAACAGGCTAGAAGTAAATGAAGCTTATAAGAAAGCTTTATGGACATGGG
CAAAATGGGTTGATTCTAACATCAACAGAAGCCATACCAGGGTCTTCTTCGGTGGATACTCAGCTTCTCACTTCAGGAAAGGGAAATGGGATTCAGGTGG
GCATTGTCATGAAGAGAGGCAGCCTGTAACAAACGACACTCTACTTAAACCATATCCATTGATGATGAAGATTCTCGAATCTGTTATATCAGAGATGAAG
ACGCCAGTTTTTTACCTCAACATTACCAGAATGACAGGGTACAGAAAAGATGGGCATCCTTCGGTTTACCGGAAACCTAATGTCCATCAAAGAATTCCTG
GGATTATCCAAGATTGCAGCCATTGGTGTCTTCCCGGTGTTCCAGACTCCTGGAATGAGCTTTTCTACGCCACTTACCTTTTATCACATCATGCTTTGTC
AAGCAACCACTAG
AA sequence
>Potri.T171301.1 pacid=42766849 polypeptide=Potri.T171301.1.p locus=Potri.T171301 ID=Potri.T171301.1.v4.1 annot-version=v4.1
MAPFKNLFTTSINISRTLSFPLPRSRTHRLAIALLLLSLFFFSSTSLTNQLPSFLTASSLASSILFAANYISPFSSITSSRACLVSDSTDNCTLSSVTAM
ERTRMNPRKEEEIDDVIAGLSSCDIFNGNWVLDDSDPIYQPGSCPFLDDAFNCFNNGRPDLDYLRYRWKPHGCHIPRFDGRQMLRMLRGKRMVFVGDSLN
RNMWQSLVCALRESVENKSRIFEIEGRREFRARGFYSFNFVDHNCSIDFVKSPFLVQEWRSSDRRGNRRERLRLDMIQTPSFNYHDADIIIFNTGHWWTH
QKTYRGKNYFQEGRKVYNRLEVNEAYKKALWTWAKWVDSNINRSHTRVFFGGYSASHFRKGKWDSGGHCHEERQPVTNDTLLKPYPLMMKILESVISEMK
TPVFYLNITRMTGYRKDGHPSVYRKPNVHQRIPGIIQDCSHWCLPGVPDSWNELFYATYLLSHHALSSNH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.T171301
[exp]
0 1

Potri.T171301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.